Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00001 ATGGTGGAGAGGGGTTCAAGGGAAGTAGCAGAAATGAGCACGGCATCAAGGGAAGCACACATGTCCATAGCAGCTTCTTCCATGTTCCCTGGCTTCAGGTTCTGTCCCACTGACGAGGAGTTGATCTCTTACTACCTCAGGAAAAAGCTTGACGGTGATGAGGACAGTGTTCAGGTCATTTCCGAGCTTGAGCTTTGCACCTTTGAACCTTGGGATTTACCAGGGAAATCGTTCATTCAATCAGAGAACGAGTGGTTTTTCTTCTCACCAAGGGGGAGAAAGTATCCAAATGGTTCACAGAGTAAAAGGGCAACTGAATGTGGCTATTGGAAGGCTACAGGGAAAGAGCGCAACGTTAAGTCCGGTCAGAATGTGATTGGTACCAAGCGCACTTTGGTATTCCACCTTGGCCGTGCTCCTAAGGGAGAAAGGACTGAATGGATCATGCATGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTCAAGAGGAACACCGAATTCCGTATGAGCGATCATTCTAACAGAGCCTCTTCCAGTCAAATCAACAATGTAAATTCACATGAGAGTGATTGTGGTGTCTCAGAAGGTGTTACAGATCAAGGAGGTACTTCTCTGCATCTTCATCAAGATAAAGAGCTTGGGTGCGGCTGCAGCTCCAAGAGAAGCAGCAGTAGTAACAGTTCTCCTTCTACTACTGGCCAAATGGATTCTGTAACCGAATCCAATCCTAAGGTGGATGAAGAGGATTGTTATGCAGAGATCCTAAAGCATGATATAATCAAGTTAGATGAATCGGCACTCTCACGGGTGGCGGTGACTCCCACCACAACACCGTCGCCGCCACAGGACCGCCCTTGCCAAGGGACAGCAAACAGGAGAATAAGGCTGAGGGTTCCAAAATCAAGGGTTTCTGTTTCTTCCACTTTACCAGCAGGAATTCGTTTCCAATGCTCCAAGCAATCATCAAGGAGAAACACCATCTTTGTGCCCAACCGTTTGCTGCTGTTTACTTTCTTGGTTTTCACTTTGTTAGCTCTAAGCTTCTTCCTCATTGGGAGGTCCCAAACTACTACTGCACAATATTCTGGACAGCTTGGAAGTTGA 1122 0.4688 MVERGSREVAEMSTASREAHMSIAASSMFPGFRFCPTDEELISYYLRKKLDGDEDSVQVISELELCTFEPWDLPGKSFIQSENEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGQNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNTEFRMSDHSNRASSSQINNVNSHESDCGVSEGVTDQGGTSLHLHQDKELGCGCSSKRSSSSNSSPSTTGQMDSVTESNPKVDEEDCYAEILKHDIIKLDESALSRVAVTPTTTPSPPQDRPCQGTANRRIRLRVPKSRVSVSSTLPAGIRFQCSKQSSRRNTIFVPNRLLLFTFLVFTLLALSFFLIGRSQTTTAQYSGQLGS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00001 373 MobiDBLite consensus disorder prediction 177 210 - -
Stsc120885g00001 373 SUPERFAMILY NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Stsc120885g00001 373 Gene3D NAC domain 37 175 IPR036093 GO:0003677|GO:0006355
Stsc120885g00001 373 ProSiteProfiles NAC domain profile. 28 170 IPR003441 GO:0003677|GO:0006355
Stsc120885g00001 373 Pfam No apical meristem (NAM) protein 30 153 IPR003441 GO:0003677|GO:0006355
Stsc120885g00001 373 MobiDBLite consensus disorder prediction 222 251 - -
Stsc120885g00001 373 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 27 233 - -
Stsc120885g00001 373 MobiDBLite consensus disorder prediction 222 246 - -
Stsc120885g00001 373 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00001 Stsc-Chr120885 2410 4625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00001 16 285 NAC Transcription Factor Family AT2G27300 54.815 2.52e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120885g00001 NAM 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00001 - - tpra:123896537 429.869