Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120884g00013 ATGGATTCCGTGCAGCTATACTATTTGTTCGTTGAATCAGAAAGAAATCCAGAAGAAGATCCTCTTTTGCTTTGGCTTACAGGAGGCCCCGGTTGTTCTGGTTTCTCTGGCCTCGTCTTCGAAGTAGGTCCGCTTATGTTTGATTATGCCAAATCAAGTAGAGAGAGTGGAAAATTACCTAGCCTTAAGTTGAATCCATTCTCATGGACTAAGGTAGCTAGTATGATATTCTTAGATGCCCCTGTGGGTACTGGATTTTCTTATGCTACAAATCCGGAGGCTTATGGAGTCACTGATACATTAGCAGCTGCACATAATTACGAGTTTTTGCGCAAGTGGCTTATGTCGAATCCCAAATTCCAGAAGAATCCGCTATACATAGCAGGGGATTCTTATTCGGGCATCATCCTCCCTATTCTTGTCAAGAACATATCCGATGGAAACGAAAGTGGAGAAGATATTCCGGGAGGAAGAATGAATCTGAAAGGATATATACTGGGAAACCCCGTGACAGATTTGTTTGTTGATGAAAACTGGAGAATTCCATTCTATCACAAACTCGCGCTTATTCCCGATCAACTCTATCAGGCAACTCAAACAAATTGCAAAGGTCAATACATAAATGTTGACTCCACCAATGCATCATGTCTCCTGAATCTAGAAATTGTGTCCCAGTGCGTTAAGGATCTAGCGGAAGCTCAAATACTAGAACCTAATTGTTTCTCTGATAACAACCTCAAGGGGCCTAATAAGGCATTTGGATGGGATGGTAGTAGTATTCTCACACACCATAAACCAACCCGCTGGTGTCGGTTCTACAACTACGTCTTCTCTTATATCTGGGCTAACAATGGACAAGTTCAAACAGCTCTTCACGTTCGGAAGGGAACCAAGATGGAATGGAAAAGATGCAATCGGAGTTTATCTTACACCTATGATGTCACAAGCACTGTACCATATCACAAGTATCTTACCACCAAAGACTATCAAGTTTTGATTTACAGTGGAGATCATGATTCACTTATTCCATACATCAGTACAAATGCATGGATCAAATCTCTGAATTTGTCGCTCAAACGAGACTGGTTCCCATGGTATGTAGGTCAACAAGTTGGAGGATATGCATTGCAGTATAAAAATGAGCAGAATTACAGCCTAGTGTATGCAACTGTGAAGGCAAGATAA 1185 0.4143 MDSVQLYYLFVESERNPEEDPLLLWLTGGPGCSGFSGLVFEVGPLMFDYAKSSRESGKLPSLKLNPFSWTKVASMIFLDAPVGTGFSYATNPEAYGVTDTLAAAHNYEFLRKWLMSNPKFQKNPLYIAGDSYSGIILPILVKNISDGNESGEDIPGGRMNLKGYILGNPVTDLFVDENWRIPFYHKLALIPDQLYQATQTNCKGQYINVDSTNASCLLNLEIVSQCVKDLAEAQILEPNCFSDNNLKGPNKAFGWDGSSILTHHKPTRWCRFYNYVFSYIWANNGQVQTALHVRKGTKMEWKRCNRSLSYTYDVTSTVPYHKYLTTKDYQVLIYSGDHDSLIPYISTNAWIKSLNLSLKRDWFPWYVGQQVGGYALQYKNEQNYSLVYATVKAR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120884g00013 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 78 88 IPR001563 GO:0004185|GO:0006508
Stsc120884g00013 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 65 77 IPR001563 GO:0004185|GO:0006508
Stsc120884g00013 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 138 IPR001563 GO:0004185|GO:0006508
Stsc120884g00013 394 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 5 392 IPR001563 GO:0004185|GO:0006508
Stsc120884g00013 394 Gene3D alpha/beta hydrolase 1 393 IPR029058 -
Stsc120884g00013 394 SUPERFAMILY alpha/beta-Hydrolases 4 391 IPR029058 -
Stsc120884g00013 394 Pfam Serine carboxypeptidase 3 392 IPR001563 GO:0004185|GO:0006508
Stsc120884g00013 394 FunFam Serine carboxypeptidase-like 19 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120884g00013 Stsc-Chr120884 66585 70254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120884g00013 281 393 Calmodulin-binding Proteins AT2G22960 43.363 2.26e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120884g00013 K16296 - cave:132177596 476.092