Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120884g00012 ATGGATTCCGTGCAGCTATACTATTTGTTCGTTGAATCAGAAAGAAATCCAGAAGAAGATCCTCTTTTGCTTTGGCTTACAGGAGGCCCCGGTTGTTCTGGTTTCTCTGGCCTCGTCTTCGAAGTAGGTCCGCTTATGTTTGATTATGCCAAATCAAGTAGAGAGAGTGGAAAATTACCTAGCCTTAAGTTGAATCCATTCTCATGGACTAAGGTAGCTAGTATGATATTCTTAGATGCCCCTGTGGGTACTGGATTTTCTTATGCTACAAATCCGGAGGCTTATGGAGTCACTGATACATTAGCAGCTGCACATAATTACGAGTTTTTGCGCAAGTGGCTTATGTCGAATCCCAAATTCCAGAAGAATCCGCTATACATAGCAGGGGATTCTTATTCGGGCATCATCCTCCCTATTCTTGTCAAGAACATATCCGATGGAAACGAAAGTGGAGAAGATATTCCGGGAGGAAGAATGAATCTGAAAGGATATATACTGGGAAACCCCGTGACAGATTTGTTTGTTGATGAAAACTGGAGAATTCCATTCTATCACAAACTCGCGCTTATTCCCGATCAACTCTATCAGGCAACTCAAACAAATTGCAAAGGTCAATACATAAATGTTGACTCCACCAATGCATCATGTCTCCTGAATCTAGAAATTGTGTCCCAGTGCGTTAAGGATCTAGCGGAAGCTCAAATACTAGAACCTAATTGTTTCTCTGATAACAACCTCAAGGGGCCTAATAAGGCATTTGGATGGGATGGTAGTAGTATTCTCACACACCATAAACCAACCCGCTGGTGTCGGTTCTACAACTACGTCTTCTCTTATATCTGGGCTAACAATGGACAAGTTCAAACAGCTCTTCACGTTCGGAAGGGAACCAAGATGGAATGGAAAAGATGCAATCGGAGTTTATCTTACACCTATGATGTCACAAGCACTGTACCATATCACAAGTATCTTACCACCAAAGACTATCAAGTTTTGATTTACAGTGGAGATCATGATTCACTTATTCCATACATCAGTACAAATGCATGGATCAAATCTCTGAATTTGTCGCTCAAACGAGACTGGTTCCCATGGTATGTAGGTCAACAAGTTGGAGGATATGCATTGCAGTATAAAAATGAGCAGAATTACAGCCTAGTGTATGCAACTGTGAAGGGAGGGGGCCACACCGCACCAGAGTACAGGCCTGAGGAATGTTTAGCTATGATATCTAAGTGGCTTGCTGGTTTCACTATCTAA 1260 0.4206 MDSVQLYYLFVESERNPEEDPLLLWLTGGPGCSGFSGLVFEVGPLMFDYAKSSRESGKLPSLKLNPFSWTKVASMIFLDAPVGTGFSYATNPEAYGVTDTLAAAHNYEFLRKWLMSNPKFQKNPLYIAGDSYSGIILPILVKNISDGNESGEDIPGGRMNLKGYILGNPVTDLFVDENWRIPFYHKLALIPDQLYQATQTNCKGQYINVDSTNASCLLNLEIVSQCVKDLAEAQILEPNCFSDNNLKGPNKAFGWDGSSILTHHKPTRWCRFYNYVFSYIWANNGQVQTALHVRKGTKMEWKRCNRSLSYTYDVTSTVPYHKYLTTKDYQVLIYSGDHDSLIPYISTNAWIKSLNLSLKRDWFPWYVGQQVGGYALQYKNEQNYSLVYATVKGGGHTAPEYRPEECLAMISKWLAGFTI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120884g00012 419 ProSitePatterns Serine carboxypeptidases, histidine active site. 386 403 IPR033124 GO:0004185
Stsc120884g00012 419 Gene3D alpha/beta hydrolase 1 418 IPR029058 -
Stsc120884g00012 419 SUPERFAMILY alpha/beta-Hydrolases 4 417 IPR029058 -
Stsc120884g00012 419 FunFam Serine carboxypeptidase-like 19 1 245 - -
Stsc120884g00012 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 65 77 IPR001563 GO:0004185|GO:0006508
Stsc120884g00012 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 78 88 IPR001563 GO:0004185|GO:0006508
Stsc120884g00012 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 386 399 IPR001563 GO:0004185|GO:0006508
Stsc120884g00012 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 138 IPR001563 GO:0004185|GO:0006508
Stsc120884g00012 419 Pfam Serine carboxypeptidase 3 415 IPR001563 GO:0004185|GO:0006508
Stsc120884g00012 419 FunFam Carboxypeptidase 317 416 - -
Stsc120884g00012 419 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 5 403 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120884g00012 Stsc-Chr120884 66585 70254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120884g00012 281 416 Calmodulin-binding Proteins AT2G22960 45.588 8.47e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120884g00012 K16296 - cave:132177596 519.62