Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120884g00004 ATGACATACGGTTGTGGCAATGCAATGCAGGTTCAGGAATTTTATTCGTTCCATCCAGTAACGGCTTTTCTTTCCATCAACTACATGGATCGCTTCCTCTCCCTGGTCTCTCTTCCGCGTGGGAGTAGTGGGTGGGCATATCAGCTACTATCGGTGGCGTGTTTGTCTGTAGCAGCCAAAATGGAGGAGCCTCAAGTCCCTCTTTTGCTTGATCTCCAGCTTTTCCACCCTACCTTCGTCTTTCACCCCAAAACCCTTCAGAGGATGGAGCTTTGCCTCATGTCTATTCTCAAATGGACACTCCGCTCGGTTACCCCCTTCCATTACCTTCATTATTACTTCACCAACCTCCCGTCTTCTTCTTCTTCTTCCTTCAGCCGTGCACAGTTATTCTCCGCTGCCTCCCACCTCATCCTCGCCACCAACCGTGTGATTGAGTTCTTGGAGTTTCCGCCGTCCGCCGTTGCAGCCGCCGCAGTCCTCTGCTCAGCTGGGTACCACCACCCTGATATCCCCATGTGTTTCCATCAGAGAGTAAACCATGAAATGGTGAGACGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTCCCGCATCCACCACCAAAGCCACGCCAAGCCAGCCGCCACCTCAAAGCCCCGCCGGCGTCCTCGACGTTGCCCCCTGTCCCAGCTGCGACACTCCTTCCTCGGCCCACCCCCAACATGAGCCGCCGAACAAGCGGCTGCGATCCTCTGCCCCGGATATACAGCAGCCCTAG 768 0.5508 MTYGCGNAMQVQEFYSFHPVTAFLSINYMDRFLSLVSLPRGSSGWAYQLLSVACLSVAAKMEEPQVPLLLDLQLFHPTFVFHPKTLQRMELCLMSILKWTLRSVTPFHYLHYYFTNLPSSSSSSFSRAQLFSAASHLILATNRVIEFLEFPPSAVAAAAVLCSAGYHHPDIPMCFHQRVNHEMVRRCHQLMEEYVVDTCPASTTKATPSQPPPQSPAGVLDVAPCPSCDTPSSAHPQHEPPNKRLRSSAPDIQQP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120884g00004 255 PANTHER CYCLINS 9 196 IPR039361 -
Stsc120884g00004 255 CDD CYCLIN_AtCycD-like_rpt1 10 99 - -
Stsc120884g00004 255 MobiDBLite consensus disorder prediction 201 255 - -
Stsc120884g00004 255 Gene3D - 9 102 - -
Stsc120884g00004 255 Gene3D - 103 167 - -
Stsc120884g00004 255 Pfam Cyclin, N-terminal domain 9 101 IPR006671 -
Stsc120884g00004 255 Pfam Cyclin, C-terminal domain 104 198 IPR004367 -
Stsc120884g00004 255 FunFam D6-type cyclin 93 189 - -
Stsc120884g00004 255 SUPERFAMILY Cyclin-like 8 101 IPR036915 -
Stsc120884g00004 255 SMART cyclin_7 9 95 IPR013763 -
Stsc120884g00004 255 SMART Cyclin_C_2 104 228 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120884g00004 Stsc-Chr120884 19526 21301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120884g00004 9 205 Core Cell Cycle Gene Families AT1G70210 40.580 4.92e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120884g00004 K18810 - gmx:100776178 290.812