Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120884g00003 ATGTCTTCTTCGTCTCCGGATCACTCCACTACCGCCGCTAGCGTAATCTCCGATCACCCTTCTCCACCGTCACGGCCAGCACCCTGGCAGTCCTACGACGACGATTCGGACATCAGCGAACTCATTGAGGCAGAGGCGCAGCACATGGTGGCGGCGGATTACCTGCGGCGGTGCGGCGACGGTTCGGTGGACGTGAGGGCACGGTTGGACGCAATCAACTGGATTTTAAAGGTTCAGGAATTTTATTCGTTCCATCCAGTAACGGCTTTTCTTTCCATCAACTACATGGATCGCTTCCTCTCCCTGGTCTCTCTTCCGCGTGGGAGTAGTGGGTGGGCATATCAGCTACTATCGGTGGCGTGTTTGTCTGTAGCAGCCAAAATGGAGGAGCCTCAAGTCCCTCTTTTGCTTGATCTCCAGCTTTTCCACCCTACCTTCGTCTTTCACCCCAAAACCCTTCAGAGGATGGAGCTTTGCCTCATGTCTATTCTCAAATGGACACTCCGCTCGGTTACCCCCTTCCATTACCTTCATTATTACTTCACCAACCTCCCGTCTTCTTCTTCTTCTTCCTTCAGCCGTGCACAGTTATTCTCCGCTGCCTCCCACCTCATCCTCGCCACCAACCGTGTGATTGAGTTCTTGGAGTTTCCGCCGTCCGCCGTTGCAGCCGCCGCAGTCCTCTGCTCAGCTGGGTACCACCACCCTGATATCCCCATGTGTTTCCATCAGAGAGTAAACCATGAAATGGTGAGACGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTCCCGCATCCACCACCAAAGCCACGCCAAGCCAGCCGCCACCTCAAAGCCCCGCCGGCGTCCTCGACGTTGCCCCCTGTCCCAGCTGCGACACTCCTTCCTCGGCCCACCCCCAACATGAGCCGCCGAACAAGCGGCTGCGATCCTCTGCCCCGGATATACAGCAGCCCTAG 969 0.5645 MSSSSPDHSTTAASVISDHPSPPSRPAPWQSYDDDSDISELIEAEAQHMVAADYLRRCGDGSVDVRARLDAINWILKVQEFYSFHPVTAFLSINYMDRFLSLVSLPRGSSGWAYQLLSVACLSVAAKMEEPQVPLLLDLQLFHPTFVFHPKTLQRMELCLMSILKWTLRSVTPFHYLHYYFTNLPSSSSSSFSRAQLFSAASHLILATNRVIEFLEFPPSAVAAAAVLCSAGYHHPDIPMCFHQRVNHEMVRRCHQLMEEYVVDTCPASTTKATPSQPPPQSPAGVLDVAPCPSCDTPSSAHPQHEPPNKRLRSSAPDIQQP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120884g00003 322 SMART cyclin_7 73 162 IPR013763 -
Stsc120884g00003 322 CDD CYCLIN_AtCycD-like_rpt1 67 166 - -
Stsc120884g00003 322 PANTHER CYCLINS 33 263 IPR039361 -
Stsc120884g00003 322 SMART Cyclin_C_2 171 295 IPR004367 -
Stsc120884g00003 322 Gene3D - 51 169 - -
Stsc120884g00003 322 Pfam Cyclin, C-terminal domain 171 265 IPR004367 -
Stsc120884g00003 322 SUPERFAMILY Cyclin-like 32 168 IPR036915 -
Stsc120884g00003 322 FunFam D6-type cyclin 51 164 - -
Stsc120884g00003 322 MobiDBLite consensus disorder prediction 1 18 - -
Stsc120884g00003 322 Pfam Cyclin, N-terminal domain 40 168 IPR006671 -
Stsc120884g00003 322 ProSitePatterns Cyclins signature. 68 99 IPR006671 -
Stsc120884g00003 322 MobiDBLite consensus disorder prediction 1 30 - -
Stsc120884g00003 322 Gene3D - 40 233 - -
Stsc120884g00003 322 FunFam D6-type cyclin 165 256 - -
Stsc120884g00003 322 MobiDBLite consensus disorder prediction 268 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120884g00003 Stsc-Chr120884 19526 21564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120884g00003 38 232 Core Cell Cycle Gene Families AT5G65420 45.918 1.61e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120884g00003 K18810 - gmx:100776178 355.525