Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120883g00013 ATGAAGGTCATCGCCGCCTACCTCCTTGCTGTCCTCGGTGGCAACGCCGCTCCATCCGCCTCCGATCTCAAGGGCATTCTCAGCTCCGTGGAAGGAAAAGACATTACAGAGGTTATTGCCGCCGGTAGGGAAAAGCTTGCGTCGGTGCCATGTGGTGGTGGTGGTGGTGGTGTTGCCGTTGCCGCTGCTCCTAGCGGTGGTGCTGCTGCTCCCGCAGCCGCCGAGGCAAAGAAGGAAGAGAAGGTCGAAGAGAAGGAGGAATCAGATGATGATATGGGATTCAGTCTCTTTGATTAA 297 0.5657 MKVIAAYLLAVLGGNAAPSASDLKGILSSVEGKDITEVIAAGREKLASVPCGGGGGGVAVAAAPSGGAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120883g00013 98 MobiDBLite consensus disorder prediction 69 98 - -
Stsc120883g00013 98 CDD Ribosomal_P2 1 98 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc120883g00013 98 Hamap 50S ribosomal protein L12 [rpl12]. 2 98 IPR027534 GO:0003735|GO:0005840|GO:0006414
Stsc120883g00013 98 Gene3D - 1 32 IPR038716 -
Stsc120883g00013 98 Pfam 60s Acidic ribosomal protein 18 97 - -
Stsc120883g00013 98 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 98 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120883g00013 Stsc-Chr120883 115059 115948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120883g00013 1 98 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 60.526 1.94e-21 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120883g00013 K02943 - csav:115694745 93.9745