Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120883g00012 ATGCCACTGGGAAACGGCGACGCTGGCTTGAGGCACAGAGGAGCTCAGAGACGAAATAGATCTAACGACAAGGCTGTACAACGAGGCTGCAGGCAGATGGCTCAAGCACACAAGCATACCGAAGATGAAGCAAAGGAAGCCTCAGCAAATTATAATTTTCAGGATGGAGTGAGTAAATCACAGTTCATCAAGGTGTTGAATGAAGAGTTGGTTCCAATCATAGAGGCATGCAAATATCTTGATGAGAAGTGGTGTCCCAAGTTCACTTTTATTGTTGCTCAGAAGAATCATCATAGCAAATTGTTTAAAGACAATGTCCCAGATAATGTTCCACCAGGATAA 342 0.4357 MPLGNGDAGLRHRGAQRRNRSNDKAVQRGCRQMAQAHKHTEDEAKEASANYNFQDGVSKSQFIKVLNEELVPIIEACKYLDEKWCPKFTFIVAQKNHHSKLFKDNVPDNVPPG 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120883g00012 113 SUPERFAMILY Ribonuclease H-like 53 113 IPR012337 -
Stsc120883g00012 113 MobiDBLite consensus disorder prediction 1 47 - -
Stsc120883g00012 113 MobiDBLite consensus disorder prediction 11 25 - -
Stsc120883g00012 113 ProSiteProfiles Piwi domain profile. 53 113 IPR003165 GO:0003676
Stsc120883g00012 113 Gene3D - 15 113 IPR036397 GO:0003676
Stsc120883g00012 113 Pfam Piwi domain 53 113 IPR003165 GO:0003676
Stsc120883g00012 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120883g00012 Stsc-Chr120883 102035 103296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120883g00012 53 105 Eukaryotic Initiation Factors Gene Family AT5G43810 49.057 9.77e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120883g00012 K11593 - twl:120001680 102.834