Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120883g00011 ATGCCTCTTCTACTCTCAGCTTCACAACCTCCCTTACTCCCTCTCATCCCACACAGTAATAAAACTCCCACCACACTTTCCAAGAACCGCTTCTGTTTCCCTCCCAACACCCTAACAACCTCACCCTCTCTCCGTTCCACCCGCATTCTCCACAAATCTTCTGCTTCTTCCTCTTCCTCAATCAACGGTGTTTCCTTTGAGAACAATCCAGAACATTCCAGAACCAAAGAATCAACTTCTCCTCCTCGGGATGAGTTCCTACTCTTCCAAACGCTCCGAACATGGCTCCGCTTCCTCCCTTCCATTCTCCCCGGTGGATCCTGGTGGAACTTCGACGGCGACATCGAAATCCAGCTACTGGCTCAGCCGGTTTCCGTCTGGCGCGCACTCGCCAAGATGTGGCTCCTTGTCGCGCGTGACCGCTGGGTCATCTTCGCCGCCTTCATCGCTCTCATTTTCGCAGCGGTTTCTGAGATTTCGATACCGCATTTCTTGACGGCGTCGATTTTCTCGGCGCAGAGCGCGGATATTGCAGTTTTTCACCAGAATGTCCGTCTTTTGGTTCTGTTGTGTGTGATATCGGGAATATGCAGTGGGATAAGAGGTTGCTGTTTTGGCATTGCAAACATGATTTTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACTCTGAAACAGTTGGTGATTTGACAAGTAGACTCGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAACGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGGGCAGGTTCATTAATCTACTTGGTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGATGATATGCATCATGCTAGCAGCAGTTATGGTACACTACGGAAGGTACCAGAAGAAGGCGGCAAGGTTGGTCCAAGAAGTCACCGCTTCTGCAAATGATGTAGCTCAAGAGACCTTGTCTCTTATTCGAACTGTCCGTGTTTATGGAACGGAAGAAGTAGAACAAGGAAGGTACAAATGGTGGCTGGAGAAATTAGCTGACATAAGCCTGCGACAAAGTGCTGCATACGGGTTTTGGAATTTAAGCTTCAATACTCTTTATCATTCAACTCAGGTTATCGCTGTGCTGTTCGGAGGAATGTCTATTCTTGCAGGACATATTACTGCTGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTAATTTATTCAACCTGGTGGGTGGGAGACAATATTTCCAATTTGATGCAATCTGTAGGAGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTTACCTAGCAACCAATTCACAGAAAGAGGAGTAAAGTTGCAGGGGTTGATGGGGCAAATTGAGTTTCTAAATGTATCTTTTCGCTACCCTACAAGGCCAACGGTATCTGTTGTGCATCTTGTAAATTTTGTTGTCCATCCCAGTGAGGTGGTTGCAATTGTTGGACTTAGTGGTAGCGGAAAAAGCACACTGGTGAACCTTTTGCTTCGTCTCTATGAGCCGACAAGCGGCCAGATTTTGATAGATGGTGTTCCTATTAAAGACTTGGACATAATGTGGTGGAGAGGGAGAATAGGATATGTTGGACAGGAACCCAAGCTCTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTACTCGCGATGTAACACAGGAGGATGTTGAATGGGCTGCAAAGGAGGCCTATGCTCATGACTTCATCTCAGCACTTCCTAATGGTTATGAAACAGTTGTCGATGACGATCTATTAAGTGGGGGTCAAAAGCAACGAATTGCTATTGCTAGAGCCATACTTCGGGACCCAAAAATATTGATACTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGTGTTCTTCGATCTGTCAGAAGTGACTCTACATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCCACCATACAAGCAGCTGACAGGATTGTGGTAATGGATGGTGGTCAAGTTGTTGAGATTGGAAGTCATAGAGAACTTCTCCTAAAAGATGGTTTATATGCTCGGTTAACTCGAAAACAGGCAGACGCCATGGCATGA 2118 0.4504 MPLLLSASQPPLLPLIPHSNKTPTTLSKNRFCFPPNTLTTSPSLRSTRILHKSSASSSSSINGVSFENNPEHSRTKESTSPPRDEFLLFQTLRTWLRFLPSILPGGSWWNFDGDIEIQLLAQPVSVWRALAKMWLLVARDRWVIFAAFIALIFAAVSEISIPHFLTASIFSAQSADIAVFHQNVRLLVLLCVISGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGAGSLIYLVILSWPLGLCTLMICIMLAAVMVHYGRYQKKAARLVQEVTASANDVAQETLSLIRTVRVYGTEEVEQGRYKWWLEKLADISLRQSAAYGFWNLSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLLPSNQFTERGVKLQGLMGQIEFLNVSFRYPTRPTVSVVHLVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPIKDLDIMWWRGRIGYVGQEPKLFRMDISSNIRYGCTRDVTQEDVEWAAKEAYAHDFISALPNGYETVVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSTSRRSVIVIAHRLSTIQAADRIVVMDGGQVVEIGSHRELLLKDGLYARLTRKQADAMA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120883g00011 705 FunFam Multidrug ABC transporter ATP-binding protein 452 704 - -
Stsc120883g00011 705 MobiDBLite consensus disorder prediction 53 69 - -
Stsc120883g00011 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 700 IPR027417 -
Stsc120883g00011 705 ProSitePatterns ABC transporters family signature. 598 612 IPR017871 GO:0005524|GO:0016887
Stsc120883g00011 705 FunFam ABC transporter B family member 26, chloroplastic 126 445 - -
Stsc120883g00011 705 Gene3D ABC transporter type 1, transmembrane domain 127 445 IPR036640 GO:0005524|GO:0016020
Stsc120883g00011 705 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 426 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120883g00011 705 CDD ABC_6TM_TAP 156 434 - -
Stsc120883g00011 705 Gene3D - 450 704 IPR027417 -
Stsc120883g00011 705 Pfam ABC transporter 481 626 IPR003439 GO:0005524
Stsc120883g00011 705 MobiDBLite consensus disorder prediction 53 81 - -
Stsc120883g00011 705 SUPERFAMILY ABC transporter transmembrane region 133 442 IPR036640 GO:0005524|GO:0016020
Stsc120883g00011 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 699 IPR003439 GO:0005524
Stsc120883g00011 705 Pfam ABC transporter transmembrane region 145 411 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120883g00011 705 SMART AAA_5 487 676 IPR003593 GO:0016887
Stsc120883g00011 705 PANTHER ABC TRANSPORTER B FAMILY 136 697 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120883g00011 Stsc-Chr120883 89540 95924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120883g00011 215 703 Calmodulin-binding Proteins AT2G36910 34.337 4.43e-71 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120883g00011 - - gmx:100813359 1064.68