Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120883g00008 ATGCCCGAACCCGCTTCAGACTCCCCCGAATCCACCATTAAATTCCTCTGCAGTTACGGCGGCAAGATCCTCCCCCGTTACCCCGACGGCAAACTCCGCTACCTCGGTGGCCACACCCGCGTTCTCTCCCTACATCGCAACATCCCCTTCTCTGAGCTCATGCTGAAGCTTGAGGAACTGTGTGGCACCTCCGTTAGGCACCTCCGCTGCCAGTTACCAGCGGAAGACCTCGACGCCTTGGTATCCATCACCTCCGACGAGGACCTAGCCAATCTAATCGAGGAATACGACCGTGCCGCCACATCTTCCCTGAAGATCAGAGCCTTTCTCTCGCAACCGAAATCTACGAACAAACTCTCCGTCATTCCGCCGCCTTCTCTACATTCGAGATCGGCGTATTCCTCATCTTCTTCGTCAGCTTCGGCCTCCTCGTCATCATCGTCGCCTTCTTCATCTCCCTATTGTAGCGTTGCTGGTACTAGTGGAAGTGGTTACCATGGCTACCATGGTTTCAGTCCTAGACAGAGTTATAAGGTGGCGGAGCCATGCATCCGTCAGATGTGGCCAGCCGCTGGCGGTGGGAAAACCGGTGGAAGAAATATTCCAGTGCCGCGTGACGGTTATGGTGGCTGCACGGTTTTAATTCTTGAAGAAGAGAGAAGGTGGAGGCTAATAACTGATCGTACAAGATGGCTTTTGGGACACTTTCTTTCTCAGTTCTGGTATCTGGAAAGAGGGGAAGATTCAAGCGGAGTGTGCTGCTTGCTGCTCCGGGAGAGTATGAACCATGAACACAGGAAGGAAGAATCCTATTAA 816 0.5319 MPEPASDSPESTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSLHRNIPFSELMLKLEELCGTSVRHLRCQLPAEDLDALVSITSDEDLANLIEEYDRAATSSLKIRAFLSQPKSTNKLSVIPPPSLHSRSAYSSSSSSASASSSSSSPSSSPYCSVAGTSGSGYHGYHGFSPRQSYKVAEPCIRQMWPAAGGGKTGGRNIPVPRDGYGGCTVLILEEERRWRLITDRTRWLLGHFLSQFWYLERGEDSSGVCCLLLRESMNHEHRKEESY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120883g00008 271 Gene3D - 31 112 - -
Stsc120883g00008 271 SMART PB1_new 27 111 IPR000270 GO:0005515
Stsc120883g00008 271 MobiDBLite consensus disorder prediction 132 153 - -
Stsc120883g00008 271 Pfam PB1 domain 29 110 IPR000270 GO:0005515
Stsc120883g00008 271 PANTHER OS05G0427100 PROTEIN-RELATED 6 161 - -
Stsc120883g00008 271 CDD PB1_UP2 16 110 - -
Stsc120883g00008 271 SUPERFAMILY CAD & PB1 domains 29 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120883g00008 Stsc-Chr120883 46535 48649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120883g00008 13 203 MAP Kinase Kinase Kinase AT5G57610 36.181 1.52e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120883g00008 - - gmx:100815157 217.624