Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120883g00007 ATGCCCGAACCCGCTTCAGACTCCCCCGAATCCACCATTAAATTCCTCTGCAGTTACGGCGGCAAGATCCTCCCCCGTTACCCCGACGGCAAACTCCGCTACCTCGGTGGCCACACCCGCGTTCTCTCCCTACATCGCAACATCCCCTTCTCTGAGCTCATGCTGAAGCTTGAGGAACTGTGTGGCACCTCCGTTAGGCACCTCCGCTGCCAGTTACCAGCGGAAGACCTCGACGCCTTGGTATCCATCACCTCCGACGAGGACCTAGCCAATCTAATCGAGGAATACGACCGTGCCGCCACATCTTCCCTGAAGATCAGAGCCTTTCTCTCGCAACCGAAATCTACGAACAAACTCTCCGTCATTCCGCCGCCTTCTCTACATTCGAGATCGGCGTATTCCTCATCTTCTTCGTCAGCTTCGGCCTCCTCGTCATCATCGTCGCCTTCTTCATCTCCCTATTGTAGCGTTGCTGGTACTAGTGGAAGTGGTTACCATGGCTACCATGGTTTCAGTCCTAGACAGAGTTATAAGGTGGCGGAGCCATGCATCCGTCAGATGTGGCCAGCCGCTGGCGGTGGGAAAACCGGTGGAAGAAATATTCCAGTGCCGCGTGACGGTTATGGTGGTCAGAAAAACACCGGCCACTTGTGTCTTATCTATAATGGCAACCACTGGCAATAG 684 0.5468 MPEPASDSPESTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSLHRNIPFSELMLKLEELCGTSVRHLRCQLPAEDLDALVSITSDEDLANLIEEYDRAATSSLKIRAFLSQPKSTNKLSVIPPPSLHSRSAYSSSSSSASASSSSSSPSSSPYCSVAGTSGSGYHGYHGFSPRQSYKVAEPCIRQMWPAAGGGKTGGRNIPVPRDGYGGQKNTGHLCLIYNGNHWQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120883g00007 227 SMART PB1_new 27 111 IPR000270 GO:0005515
Stsc120883g00007 227 Pfam PB1 domain 29 110 IPR000270 GO:0005515
Stsc120883g00007 227 SUPERFAMILY CAD & PB1 domains 29 119 - -
Stsc120883g00007 227 Gene3D - 31 112 - -
Stsc120883g00007 227 PANTHER OS05G0427100 PROTEIN-RELATED 6 161 - -
Stsc120883g00007 227 MobiDBLite consensus disorder prediction 130 153 - -
Stsc120883g00007 227 CDD PB1_UP2 16 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120883g00007 Stsc-Chr120883 45191 48596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120883g00007 13 203 MAP Kinase Kinase Kinase AT5G57610 36.181 6.98e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120883g00007 - - gmx:100815157 233.032