Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120883g00004 ATGCATCATGTATGTGTAATTTGTGACTTCTTACTCCCTTCTCTCTTCTCTCCTTCTCCACCTTCCCATGGAGGAAACACTCCGCCGCCTCAACGCCATGCCCCACCTTCCCCAACCGACCAGCACCTCACTAACCAATGCTCCTCCTCCGCTGCTGCTCTTGCTGCCGCTGCCACCACCACCTCAACCAAGCGAACCCTTCAAAAGAACACCCCTACTGCCGGCGGAGCCATGAGGTACCGGGGTGTCAGGCGGAGGCCATGGGGCCGTTATGCCGCTGAGATAAGGGACCCTCAATCTAAGGAGAGGCGTTGGCTGGGGACATTCGACACGGCGGAGGAAGCCGCCTGCGCCTATGACTGCGCCGCCAGAGCCATGCGTGGGCTCAAGGCAAGAACCAACTTTGTGTACCCTGCTTCCCCTACTCACCCTTCTTCCGTCACCACGAAAAACAACTATAAAAACCTCCTTAACCGCCATAACCAACTGTTCGCTCGGCAGTTGAGCTTCCCGAAGCATCATAATAACCAACTCTTTAACGTCCGTAACCGCCACATGGGTGGTTGTTGGCCTGACCCCTTCTCCTCCTATTCTTCTTCTTCTTCCTTTTCGACCCTCCAACAGCACCGAAACCAGCAGCAACTTAACTCCATCAACATGCTCCTCCTCCGTGACTTCATATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCGTATTCCTCTTACACCAACCCTACTTCTCCTTCATCTTCCTTTAACCACCACTTATCCTACCCCAATGGCAGTTTAGTAAACTCATCATCAACACACGGTGGCAATGTTACTAATAACTACACCGCACCCTCCTTTTCTTCCTCTTCTTCCCTTGTAACCAATACCAACTACAATACTAATTATGAAGCTGATGAGAGTAAATACTCGCAAGAATTCTTTCAACACTCGGACTCATCATCGGGGTTGTTGGAAGAGATAGTTAGCGGAATCTTGGAAAATCCCAAGCCCGCTAATAAAAGCGAGTCTTTGTTGTTAAACACACCTTCTTCTGCATCAGAGGGTTCTTGCCACCTTGACTCTGACTCATTTCCTCCTCCTCTTCCTCCTCTTCCGGCCGTTTCCGGCGGCGATACGACCAAGAAAGACGAGGATTTTAATGTTCCTTTGTATCAAGACGGTTTCCACATGCAGCAACTTGGTAGTTTCAATTTCAATGGATTTAGCATGGTGTCGTCTATGCAGGAGAATAATAATAAGAAGAACGAAATGATTAATAATAATAATGATGACGATGATCAGAGTAATGCAGAGTGGCCTGTCATAGAAGACATTTTTAATCAGTACCCAGACTTTCTTAATTAA 1371 0.4887 MHHVCVICDFLLPSLFSPSPPSHGGNTPPPQRHAPPSPTDQHLTNQCSSSAAALAAAATTTSTKRTLQKNTPTAGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPASPTHPSSVTTKNNYKNLLNRHNQLFARQLSFPKHHNNQLFNVRNRHMGGCWPDPFSSYSSSSSFSTLQQHRNQQQLNSINMLLLRDFISSSSSSSSSSSSSSSSYSSYTNPTSPSSSFNHHLSYPNGSLVNSSSTHGGNVTNNYTAPSFSSSSSLVTNTNYNTNYEADESKYSQEFFQHSDSSSGLLEEIVSGILENPKPANKSESLLLNTPSSASEGSCHLDSDSFPPPLPPLPAVSGGDTTKKDEDFNVPLYQDGFHMQQLGSFNFNGFSMVSSMQENNNKKNEMINNNNDDDDQSNAEWPVIEDIFNQYPDFLN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120883g00004 456 CDD AP2 79 135 IPR001471 GO:0003700|GO:0006355
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 18 45 - -
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 342 360 - -
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 59 81 - -
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 22 36 - -
Stsc120883g00004 456 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Stsc120883g00004 456 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Stsc120883g00004 456 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 59 73 - -
Stsc120883g00004 456 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Stsc120883g00004 456 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 231 259 - -
Stsc120883g00004 456 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
Stsc120883g00004 456 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Stsc120883g00004 456 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Stsc120883g00004 456 MobiDBLite consensus disorder prediction 336 368 - -
Stsc120883g00004 456 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 61 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120883g00004 Stsc-Chr120883 25700 27386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120883g00004 78 138 AP2-EREBP Transcription Factor Family AT1G24590 96.721 1.79e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc120883g00004 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120883g00004 - - aip:107641557 308.145