Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120882g00012 | ATGGATTTGTTTGAGTTTGGCAGGTCACTGCAAGGGAATAAACTCTCCGGCAATATTCCATCGGTGATCGGTCTCATGCAAGCACTCGCCGTCTTAGATCTGAGTTGTAACATGTTAAGTGGATCAATTCCACCTATCTTGGGAAATCTGACATATACAGAAAAATTGTATTTGCATGGAAACAAGCTCACAGGCTACATCCCCCCAGAGCTAGGAAACATGACAAAGCTTCACTATTTGGAACTGAATGATAACCGTTTAAGTGGACGCATCCCACCGGAGCTTGGAAAGCTCACCGATTTGTTTGACTTAAATGTTGCAAACAACAACCTTGAGGGGCCGATTCCCGGTAACCTTAGCTCATGTAAAAGTCTCAACAGCCTCAATGTGCACGGAAACAAGTTGACCGGAACAATTCCCGCGGCGCTGAAGAGTTTGGAGAGTATGACTTATTTAAACCTTTCTTCCAACAATCTTCAAGGCCCTATTCCGATCGAGCTATCACGGATTGGTAATTTGGATACACTGGATATTTCAAATAATAATATAATTGGCTCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTTGATTTGTCAAATAATCAACTCTCTGGCTTGATTCCTCAAGAACTTAGTCAGCTTCAGAACATGGTGTCGTTGAGGCTACAAAACAACAAATTATCAGGGGACGTGACGTCGCTTGTAAATTGCCTTAGCCTTTCGCTGCTTAATGTATCGTATAACAAACTCGTTGGTGTTATTCCTACAAGCAACAACTTTTCGAGGTTCCCCCCTGACAGTTTCATTGGAAACCCTGATCTTTGTGGCAATTGGTTGAATTCGCCTTGTCATGTCAATCACCCCACGGAGCGAGCTACATTATCTAAGGCAGCTATTCTAGGAATTGCTCTTGGTGGCCTTGTAATCCTCCTTATGATATTGCTAGCAGCTTGCCGACCATACAATCCGTCGCCTTTTCCTGACGGATCACTCGATAAACCAGTTAGTTTCTCACCGCCGAAGCTAGTGATTCTTCATATGAACATGGCGCTTCATGTGTACGAGGATATCATGAGGATGACTGAAAACTTGAGCGAGAAGTATATAATTGGATATGGTGCATCAAGCACAGTTTACAAATGTGTGCTAAAAAATTGCAAGCCAGTGGCTATCAAGAGGCTCTATTCTCACTATCCACAATGCTTGAAAGAATTCGAGACCGAACTCGAGACTGTTGGCAGCATTAAGCACCGGAATCTTGTCAGTCTCCAAGGATACTCTTTGTCCCCGTACGGACACCTTCTGTTTTATGACTACATGGAAAATGGAAGTCTATGGGATATTCTTCATGGAGCTAGCAAGAAGAAAAAGCTTGATTGGGATATGCGTCTGAAGATAGCGCTCGGAGCAGCACAGGGACTTGCCTATCTACACCATGATTGTAGTCCTCGGATCATCCACAGAGATGTAAAATCTTCAAACATTTTGCTGGATGGAGACTTTGAGCCCCATCTCACTGATTTCGGCATAGCCAAAGTTCTTTGCCCCTCGAAGTCGCACACTTCGACATACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACCTCCCGGCTCACCGAGAAGTCCGATGTGTATAGCTATGGTATTGTCTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTTCATCATCTGATTTTGTCCAAGACAGCAAACAATGCAGTGATGGAAACTGTTGATCCGGACATCACTGCCACATGCAAGGACCTTGGAGCAGTGAAGAAGGTCTATCAGCTTGCTCTATTATGCACAAAGCGGCAACCGTCAGATAGGCCGACGATGCACGAAGTGGCACGTGTCCTTGGCAGCCTCATGCCGTCTCCCGCCGCCGCTACCACCGCCTCGGCAAAACAACAAGAAGCAACCCTTACACCAACTTCACTACCATGTGCAAAAGCTCCATCATCATGCTACATTGATGAATATGCAAACCTCAAGACACCACACTTGGTTAATTGCCCTTCAATGAGTACTTCTGATGCACAGCTTTTCCTCAAGTTTGGAGAGGTAATCTCTCAAAATAGTGAGTGA | 2130 | 0.4469 | MDLFEFGRSLQGNKLSGNIPSVIGLMQALAVLDLSCNMLSGSIPPILGNLTYTEKLYLHGNKLTGYIPPELGNMTKLHYLELNDNRLSGRIPPELGKLTDLFDLNVANNNLEGPIPGNLSSCKSLNSLNVHGNKLTGTIPAALKSLESMTYLNLSSNNLQGPIPIELSRIGNLDTLDISNNNIIGSIPSSLGDLEHLLKLDLSNNQLSGLIPQELSQLQNMVSLRLQNNKLSGDVTSLVNCLSLSLLNVSYNKLVGVIPTSNNFSRFPPDSFIGNPDLCGNWLNSPCHVNHPTERATLSKAAILGIALGGLVILLMILLAACRPYNPSPFPDGSLDKPVSFSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDILHGASKKKKLDWDMRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDGDFEPHLTDFGIAKVLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPSDRPTMHEVARVLGSLMPSPAAATTASAKQQEATLTPTSLPCAKAPSSCYIDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE | 709 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120882g00012 | 709 | Gene3D | Phosphorylase Kinase; domain 1 | 342 | 443 | - | - | |
Stsc120882g00012 | 709 | ProSiteProfiles | Protein kinase domain profile. | 368 | 638 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc120882g00012 | 709 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 94 | 187 | - | - | |
Stsc120882g00012 | 709 | CDD | STKc_IRAK | 374 | 637 | - | - | |
Stsc120882g00012 | 709 | ProSitePatterns | Protein kinases ATP-binding region signature. | 374 | 396 | IPR017441 | GO:0005524 | |
Stsc120882g00012 | 709 | SUPERFAMILY | Protein kinase-like (PK-like) | 346 | 634 | IPR011009 | - | |
Stsc120882g00012 | 709 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 75 | 634 | - | - | |
Stsc120882g00012 | 709 | Pfam | Protein kinase domain | 371 | 631 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc120882g00012 | 709 | SUPERFAMILY | L domain-like | 9 | 280 | - | - | |
Stsc120882g00012 | 709 | Gene3D | Transferase(Phosphotransferase) domain 1 | 444 | 658 | - | - | |
Stsc120882g00012 | 709 | SMART | LRR_typ_2 | 194 | 217 | IPR003591 | - | |
Stsc120882g00012 | 709 | SMART | LRR_typ_2 | 218 | 245 | IPR003591 | - | |
Stsc120882g00012 | 709 | SMART | LRR_typ_2 | 26 | 50 | IPR003591 | - | |
Stsc120882g00012 | 709 | SMART | LRR_typ_2 | 146 | 170 | IPR003591 | - | |
Stsc120882g00012 | 709 | SMART | LRR_typ_2 | 74 | 98 | IPR003591 | - | |
Stsc120882g00012 | 709 | Pfam | Leucine rich repeat | 104 | 159 | IPR001611 | GO:0005515 | |
Stsc120882g00012 | 709 | Pfam | Leucine rich repeat | 172 | 231 | IPR001611 | GO:0005515 | |
Stsc120882g00012 | 709 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 7 | 93 | - | - | |
Stsc120882g00012 | 709 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 339 | 443 | - | - | |
Stsc120882g00012 | 709 | Gene3D | Ribonuclease Inhibitor | 7 | 290 | IPR032675 | - | |
Stsc120882g00012 | 709 | FunFam | Leucine-rich repeat receptor-like protein kinase | 196 | 289 | - | - | |
Stsc120882g00012 | 709 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 444 | 645 | - | - | |
Stsc120882g00012 | 709 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 489 | 501 | IPR008271 | GO:0004672|GO:0006468 | |
Stsc120882g00012 | 709 | SMART | serkin_6 | 368 | 634 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120882g00012 | Stsc-Chr120882 | 100669 | 105038 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120882g00012 | 9 | 654 | Receptor kinase-like Gene Family | AT5G07180 | 61.905 | 0.0 | 822 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XIIIb | Stsc120882g00012 | Pkinase | 3e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120882g00012 | K20718 | - | gmx:100782307 | 1165.98 |