Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120882g00012 ATGGATTTGTTTGAGTTTGGCAGGTCACTGCAAGGGAATAAACTCTCCGGCAATATTCCATCGGTGATCGGTCTCATGCAAGCACTCGCCGTCTTAGATCTGAGTTGTAACATGTTAAGTGGATCAATTCCACCTATCTTGGGAAATCTGACATATACAGAAAAATTGTATTTGCATGGAAACAAGCTCACAGGCTACATCCCCCCAGAGCTAGGAAACATGACAAAGCTTCACTATTTGGAACTGAATGATAACCGTTTAAGTGGACGCATCCCACCGGAGCTTGGAAAGCTCACCGATTTGTTTGACTTAAATGTTGCAAACAACAACCTTGAGGGGCCGATTCCCGGTAACCTTAGCTCATGTAAAAGTCTCAACAGCCTCAATGTGCACGGAAACAAGTTGACCGGAACAATTCCCGCGGCGCTGAAGAGTTTGGAGAGTATGACTTATTTAAACCTTTCTTCCAACAATCTTCAAGGCCCTATTCCGATCGAGCTATCACGGATTGGTAATTTGGATACACTGGATATTTCAAATAATAATATAATTGGCTCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTTGATTTGTCAAATAATCAACTCTCTGGCTTGATTCCTCAAGAACTTAGTCAGCTTCAGAACATGGTGTCGTTGAGGCTACAAAACAACAAATTATCAGGGGACGTGACGTCGCTTGTAAATTGCCTTAGCCTTTCGCTGCTTAATGTATCGTATAACAAACTCGTTGGTGTTATTCCTACAAGCAACAACTTTTCGAGGTTCCCCCCTGACAGTTTCATTGGAAACCCTGATCTTTGTGGCAATTGGTTGAATTCGCCTTGTCATGTCAATCACCCCACGGAGCGAGCTACATTATCTAAGGCAGCTATTCTAGGAATTGCTCTTGGTGGCCTTGTAATCCTCCTTATGATATTGCTAGCAGCTTGCCGACCATACAATCCGTCGCCTTTTCCTGACGGATCACTCGATAAACCAGTTAGTTTCTCACCGCCGAAGCTAGTGATTCTTCATATGAACATGGCGCTTCATGTGTACGAGGATATCATGAGGATGACTGAAAACTTGAGCGAGAAGTATATAATTGGATATGGTGCATCAAGCACAGTTTACAAATGTGTGCTAAAAAATTGCAAGCCAGTGGCTATCAAGAGGCTCTATTCTCACTATCCACAATGCTTGAAAGAATTCGAGACCGAACTCGAGACTGTTGGCAGCATTAAGCACCGGAATCTTGTCAGTCTCCAAGGATACTCTTTGTCCCCGTACGGACACCTTCTGTTTTATGACTACATGGAAAATGGAAGTCTATGGGATATTCTTCATGGAGCTAGCAAGAAGAAAAAGCTTGATTGGGATATGCGTCTGAAGATAGCGCTCGGAGCAGCACAGGGACTTGCCTATCTACACCATGATTGTAGTCCTCGGATCATCCACAGAGATGTAAAATCTTCAAACATTTTGCTGGATGGAGACTTTGAGCCCCATCTCACTGATTTCGGCATAGCCAAAGTTCTTTGCCCCTCGAAGTCGCACACTTCGACATACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACCTCCCGGCTCACCGAGAAGTCCGATGTGTATAGCTATGGTATTGTCTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTTCATCATCTGATTTTGTCCAAGACAGCAAACAATGCAGTGATGGAAACTGTTGATCCGGACATCACTGCCACATGCAAGGACCTTGGAGCAGTGAAGAAGGTCTATCAGCTTGCTCTATTATGCACAAAGCGGCAACCGTCAGATAGGCCGACGATGCACGAAGTGGCACGTGTCCTTGGCAGCCTCATGCCGTCTCCCGCCGCCGCTACCACCGCCTCGGCAAAACAACAAGAAGCAACCCTTACACCAACTTCACTACCATGTGCAAAAGCTCCATCATCATGCTACATTGATGAATATGCAAACCTCAAGACACCACACTTGGTTAATTGCCCTTCAATGAGTACTTCTGATGCACAGCTTTTCCTCAAGTTTGGAGAGGTAATCTCTCAAAATAGTGAGTGA 2130 0.4469 MDLFEFGRSLQGNKLSGNIPSVIGLMQALAVLDLSCNMLSGSIPPILGNLTYTEKLYLHGNKLTGYIPPELGNMTKLHYLELNDNRLSGRIPPELGKLTDLFDLNVANNNLEGPIPGNLSSCKSLNSLNVHGNKLTGTIPAALKSLESMTYLNLSSNNLQGPIPIELSRIGNLDTLDISNNNIIGSIPSSLGDLEHLLKLDLSNNQLSGLIPQELSQLQNMVSLRLQNNKLSGDVTSLVNCLSLSLLNVSYNKLVGVIPTSNNFSRFPPDSFIGNPDLCGNWLNSPCHVNHPTERATLSKAAILGIALGGLVILLMILLAACRPYNPSPFPDGSLDKPVSFSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDILHGASKKKKLDWDMRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDGDFEPHLTDFGIAKVLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPSDRPTMHEVARVLGSLMPSPAAATTASAKQQEATLTPTSLPCAKAPSSCYIDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120882g00012 709 Gene3D Phosphorylase Kinase; domain 1 342 443 - -
Stsc120882g00012 709 ProSiteProfiles Protein kinase domain profile. 368 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120882g00012 709 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 187 - -
Stsc120882g00012 709 CDD STKc_IRAK 374 637 - -
Stsc120882g00012 709 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Stsc120882g00012 709 SUPERFAMILY Protein kinase-like (PK-like) 346 634 IPR011009 -
Stsc120882g00012 709 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 75 634 - -
Stsc120882g00012 709 Pfam Protein kinase domain 371 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120882g00012 709 SUPERFAMILY L domain-like 9 280 - -
Stsc120882g00012 709 Gene3D Transferase(Phosphotransferase) domain 1 444 658 - -
Stsc120882g00012 709 SMART LRR_typ_2 194 217 IPR003591 -
Stsc120882g00012 709 SMART LRR_typ_2 218 245 IPR003591 -
Stsc120882g00012 709 SMART LRR_typ_2 26 50 IPR003591 -
Stsc120882g00012 709 SMART LRR_typ_2 146 170 IPR003591 -
Stsc120882g00012 709 SMART LRR_typ_2 74 98 IPR003591 -
Stsc120882g00012 709 Pfam Leucine rich repeat 104 159 IPR001611 GO:0005515
Stsc120882g00012 709 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Stsc120882g00012 709 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 7 93 - -
Stsc120882g00012 709 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 443 - -
Stsc120882g00012 709 Gene3D Ribonuclease Inhibitor 7 290 IPR032675 -
Stsc120882g00012 709 FunFam Leucine-rich repeat receptor-like protein kinase 196 289 - -
Stsc120882g00012 709 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 444 645 - -
Stsc120882g00012 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Stsc120882g00012 709 SMART serkin_6 368 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120882g00012 Stsc-Chr120882 100669 105038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120882g00012 9 654 Receptor kinase-like Gene Family AT5G07180 61.905 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Stsc120882g00012 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120882g00012 K20718 - gmx:100782307 1165.98