Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120882g00009 ATGGAGCAGTATAAAGAAGCTCCATTTGGTGAGCTTAGCCCACATGTTTTTGCTGTTGCAGAGGCATCTTATAGAGCAATGAGGAATGAAGGTAAAAGTCAATCTATCTTGGTAAGCGGTGAAAGTGGTGCTGGGAAAACAGAGACAACAAAATTAATTATGCAGTATCTTACCTTCGTTGGTGGACGTGCTGGTAGTGATGATAGAACAGTTGAACAACAACTTCTGGCAGATGCTGAAAAGTATAAGCTAGGACATCCAAGCCACTTCCACTATTTAAATCAAAGTAAAATCTATGAACTTGATGGTGTAAACAATGCTGAAGAATATGTGAACACGAGGAGGTCAATGGATATTGTTGGCATAAGTCACGAGGATCAGGAAGCCATATTTCGTGTCTTAGCTGCAATTTTACATTTGGGAAATATTGAATTTTCTCCTGGAAAAGTGGCTGACTCGTCAGCAGTAACAGATGACAAATCAAGATTTCATATGCAGATGGCTGCTGAACTTTTTATGTGCGATGTAGAGCTACTGCTAGCAACATTGTGTACTCGGTCAAGACAAACCCCAGACGAAAATATAATTAACAATCTTGATTGTAACGATGCTGTTGCTGGACGGGATGCTTTGGCAAAATCGGTTTATGCTTGTTTATTTGATTGGATTGTTGATAAGATCAATAAGTCTGTTGGTCAAGATGAAAAATCCCAGATTCTAATTGGAGTATTGGATATCTATGGTTTTGAGTGCTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAACTTTGCAAACGAAAAGCTTCAGCAACACTTTAATAAGCATGTATTCAAGATGGAGAAGGAAGAGTATGATAGAGAAGAAATAAACTGGAGGGATATTGAATTTGTGGATAACCAAGATGTGTTAGATTTGATTGAAAAGAGAGACCGTTTATGGATGGTCTTCTTCTGCCTTTCACCTCTTGTCCACCTTCCATCTCATCCACCCTCTTAA 999 0.3854 MEQYKEAPFGELSPHVFAVAEASYRAMRNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAGSDDRTVEQQLLADAEKYKLGHPSHFHYLNQSKIYELDGVNNAEEYVNTRRSMDIVGISHEDQEAIFRVLAAILHLGNIEFSPGKVADSSAVTDDKSRFHMQMAAELFMCDVELLLATLCTRSRQTPDENIINNLDCNDAVAGRDALAKSVYACLFDWIVDKINKSVGQDEKSQILIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNKHVFKMEKEEYDREEINWRDIEFVDNQDVLDLIEKRDRLWMVFFCLSPLVHLPSHPPS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120882g00009 332 SMART MYSc_2a 1 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00009 332 SMART AAA_5 32 144 IPR003593 GO:0016887
Stsc120882g00009 332 Gene3D Myosin VI head, motor domain, U50 subdomain 123 233 - -
Stsc120882g00009 332 Gene3D Kinesin motor domain 234 249 IPR036961 -
Stsc120882g00009 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 310 IPR027417 -
Stsc120882g00009 332 PANTHER MYOSIN 1 77 - -
Stsc120882g00009 332 ProSiteProfiles Myosin motor domain profile. 1 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00009 332 Gene3D - 79 121 - -
Stsc120882g00009 332 Pfam Myosin head (motor domain) 80 310 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00009 332 Pfam Myosin head (motor domain) 1 77 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00009 332 Gene3D Kinesin motor domain 1 78 IPR036961 -
Stsc120882g00009 332 Gene3D - 250 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120882g00009 Stsc-Chr120882 79901 83783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120882g00009 1 310 Myosins gene family AT4G33200 54.974 6.95e-124 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120882g00009 K10357 - vum:124845124 399.438