Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120882g00008 ATGACACCCATTGGTATCATTGCTCTATTGCATGAAGCCTGCATATTCCCAGAATCTACCTATAAAACATTCTCAACCAAGTTGTTTAATTGTTTCCGGTCTCACCGAAAATTGACAAAGGAAAAGTTATCACCAACTGATTTCACTATTACTCATTATGGGGGAGAGGTTACATATCACACAGATTCCTTCTTAGACAAAAATCGTGATTATGTTGTAGTAGAACACCGTAATTTATTGTCTTCTTCAAAATGCCCCCTTGTGTCTGGTCTTTCTCTTTTGCTACCAGAGCGATCTTCAAGATCATCTTACAAGTTTTCATCTGTGGCATTAAGATTTAAGCAACAACTTCAAGCTCTTATGGAGACCCTTAAACCAACAGATCCTCATTACATACGATGTGTGAAGCCAAATTCTTTGAACTGGTCACAAAAGTTTGAGAATTCTAGTGTCGTACACCAATTGCGATGTGGGGGTGTCCTTGAAGCTGTTCGTATAAGCCTAGCTGGTTATCCTATACGACGGACTTATTCAGACTTTGTGGATCGCTTTGGCTTAATAGCCCCTGAATATATGGATGGGAGTTATGATAATAAAGTTGCAACTGAGGGAATTCTGAAAAAGATCAAGCTTGATAACTTTGAGTTGGGTAGAACCAAAGTATTTCTCAAGGCTGGTCAAATTGGCATTTTAGACTCTAGACGTGCTGAGCTTCTGCACAATGCTGCAAAATATATTCAACGGCGGCAGACATTTATTTTACGCAGGAATTTCATCAAACTCAGAGCTGCTGCAGTTTCTATTCAGTCATGTTGCAGGGGGAGCATTGCTCGTAAGGTTTACGTTGCTAAAAGGGAGACAGCTGCAGCGATCTCCATTCAGAAATACATTCGCATGTGTGTAAGCAGGTGTGCTTACTTGAAACTATATTCAGCCACTGTCGTCATTCAGTCACACGTCCGAGGTTTCACAACTAGAAAAAGATTCTTGCATGGGAAGGAGCATAGAGCTGCTACTGTTATTCAGGCATACTGGAGGATGTCCAAGGTTAGGTCGGCTTTCAAACAACATCAAGCTTCTACTGTGGCAATACAATGCCTTTGGCGGCGTAAACAAGCTAAAAGAGAGCTTCGAAGACTTAAGCAAGAGGCTAATGAGCTTGGTGCTCTCCGTTTAGCTAAGAGTGAACTTGAGAAGCAATTGGACGTGCTGAAATGGCGATTGCATCTTGAAAAGAAAATAAGGGTTTCGAATGAAGAGTCTAAGCAAATGGAGATTTCCAAACTTCAAGAGATGTTACAAGCTTTGAATCTTGAATTAGATGCAGCTAAATTGGCAACAATTAATGAGTGCAATAAGAATGCAGTTCTGCAAAATCAGTTAGAAAAAGAGTTGGTCGTAGTGGATGTAGTACGGAAGGAAAACGCTCTTCTAAAGGATTCTTTGAGTGCCTTCGAAAAGAAGTACACAAATTTGGAACTTGAACTCATGAATGCTCAAAAAGGCTGTAATGAAATGGATGAGAAACGGAGAGATTTTGAACAGAAGTGTTCTCTACTGGAGCACAGTGTTAGGAGCCTTGAGGGTAAGATATTGAATTTAGAGGAAGAAAATCATGTGCTACGTCAGAAAGCCTTAAGTGCTGCTCCTAAGATTAACAGTTCATGGCTTGCAAAGTCATTGTCAGGGGAGTCACCAACACCCACAAAACTTATTTCTCCCTTTATGTCTAGCTCGACAGACTCCCGTCATACTAAGTTAACAACAGAGAGGCACCAGGATAACTATGAATTTCTTTCTAGGTGTATCAAAGAAAATTTGGGATTTAAAAACGGTAAACCTCTGGCAGCTTGTATCATATACAAATGTCTTCTTCAATCGCATGCCATAGAATCTGAGCACACAGCTATTTTTGATTACATAATTGAAGGCATAAATGATGTTCTAGAGGTTAAGGATAAGGATAATGGCTCTGTATTGCCATATTGGCTTTCAAATGCATCTGCGCTAATCTGCTTGTTAGAGAGAAACATGCGTTCAAATGCATCTTCTGGTTTCCGCAGCCGATTAGGCCTTGGACCAAAATTTCCGATGAAGCTTATTGGATATGATGATGGTGTTTCACATGTGGTGGCAAGATATCCTGCTATACTTTTTAAACAACAGCTCACTGCCTGTGTAGAGAAAAGTTTTGGTATTATACGACATAATTTAAAAAAGGAACTCTACCCTCTTCTTGAGCTATGTATTCAGGAAGCCAGAGTGGGAATATCCCGTGGTAGAAAGTCAACCAGATCTCCTGTTACACCACCTCAACAATCATCTGGTGGTAAATGGGACAATATTGTCAAATTCGTGGATGCACTCATGAGCCAACTTCGTGAAAACCATGTGCCTTCCTTCTTCATCCGCAAGCTAGTTAGCCAGGTGTTTTCCTTCATCAATATTGAGCTTTTTAACAGTCTTCTATTGCGGCGTGAATGTTGCACATTGTCGAACGGTGAGTATTTGAAGTTTGGTCTAGCAGAATTGGAGAACTGGATAGGCAATGCAACAGAGGAGTATGCAGGAACATCTTGGCATGAGCTTAATTATATAAGACAAGCTGTTGGCTTCTTGGTAATACATCAGAAGAGGAAGAAATCTTTGGAAGAGATTTGCCAAGATCTTTGCCCGGCACTGACAGTGAGGCAGATCTATCGAATCTGTACTATGTACTGGGACGACAAGTATTCAACCCAGAGTGTATCCAATGAGGCAATCAGTGAAATGAGGGAAATTCTTAGTAAGGACATTCAGAACGTGACCTCAAATTCTTTCCTGTTGGATGACAATCTGAGCATTCCTTTCTCGGCTGAAGACATATATATGGAAATCCCTCCTATAGATCCGGATGAAATTGAACTTCCGCCATTCTTGTCTGAACATCCTTATGCCCTGTTTCTAACTTCGCTTCAGAAGTCTACTACAGTTTCATGA 2979 0.4062 MTPIGIIALLHEACIFPESTYKTFSTKLFNCFRSHRKLTKEKLSPTDFTITHYGGEVTYHTDSFLDKNRDYVVVEHRNLLSSSKCPLVSGLSLLLPERSSRSSYKFSSVALRFKQQLQALMETLKPTDPHYIRCVKPNSLNWSQKFENSSVVHQLRCGGVLEAVRISLAGYPIRRTYSDFVDRFGLIAPEYMDGSYDNKVATEGILKKIKLDNFELGRTKVFLKAGQIGILDSRRAELLHNAAKYIQRRQTFILRRNFIKLRAAAVSIQSCCRGSIARKVYVAKRETAAAISIQKYIRMCVSRCAYLKLYSATVVIQSHVRGFTTRKRFLHGKEHRAATVIQAYWRMSKVRSAFKQHQASTVAIQCLWRRKQAKRELRRLKQEANELGALRLAKSELEKQLDVLKWRLHLEKKIRVSNEESKQMEISKLQEMLQALNLELDAAKLATINECNKNAVLQNQLEKELVVVDVVRKENALLKDSLSAFEKKYTNLELELMNAQKGCNEMDEKRRDFEQKCSLLEHSVRSLEGKILNLEEENHVLRQKALSAAPKINSSWLAKSLSGESPTPTKLISPFMSSSTDSRHTKLTTERHQDNYEFLSRCIKENLGFKNGKPLAACIIYKCLLQSHAIESEHTAIFDYIIEGINDVLEVKDKDNGSVLPYWLSNASALICLLERNMRSNASSGFRSRLGLGPKFPMKLIGYDDGVSHVVARYPAILFKQQLTACVEKSFGIIRHNLKKELYPLLELCIQEARVGISRGRKSTRSPVTPPQQSSGGKWDNIVKFVDALMSQLRENHVPSFFIRKLVSQVFSFINIELFNSLLLRRECCTLSNGEYLKFGLAELENWIGNATEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEICQDLCPALTVRQIYRICTMYWDDKYSTQSVSNEAISEMREILSKDIQNVTSNSFLLDDNLSIPFSAEDIYMEIPPIDPDEIELPPFLSEHPYALFLTSLQKSTTVS 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120882g00008 992 CDD MyosinXI_CBD 590 953 IPR037975 GO:0007015
Stsc120882g00008 992 SMART MYSc_2a 1 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00008 992 Coils Coil 475 544 - -
Stsc120882g00008 992 Pfam IQ calmodulin-binding motif 262 281 IPR000048 GO:0005515
Stsc120882g00008 992 Pfam IQ calmodulin-binding motif 311 329 IPR000048 GO:0005515
Stsc120882g00008 992 Pfam IQ calmodulin-binding motif 335 355 IPR000048 GO:0005515
Stsc120882g00008 992 Pfam IQ calmodulin-binding motif 287 306 IPR000048 GO:0005515
Stsc120882g00008 992 Gene3D - 171 281 - -
Stsc120882g00008 992 ProSiteProfiles IQ motif profile. 309 338 IPR000048 GO:0005515
Stsc120882g00008 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 285 IPR027417 -
Stsc120882g00008 992 Coils Coil 363 400 - -
Stsc120882g00008 992 SMART iq_5 285 307 IPR000048 GO:0005515
Stsc120882g00008 992 SMART iq_5 308 330 IPR000048 GO:0005515
Stsc120882g00008 992 SMART iq_5 356 378 IPR000048 GO:0005515
Stsc120882g00008 992 SMART iq_5 260 282 IPR000048 GO:0005515
Stsc120882g00008 992 SMART iq_5 333 355 IPR000048 GO:0005515
Stsc120882g00008 992 Pfam DIL domain 806 909 IPR002710 -
Stsc120882g00008 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 389 IPR027417 -
Stsc120882g00008 992 Gene3D - 1 93 - -
Stsc120882g00008 992 ProSiteProfiles Dilute domain profile. 639 930 IPR002710 -
Stsc120882g00008 992 Gene3D - 283 335 - -
Stsc120882g00008 992 Gene3D - 336 385 - -
Stsc120882g00008 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 331 IPR027417 -
Stsc120882g00008 992 ProSiteProfiles IQ motif profile. 334 363 IPR000048 GO:0005515
Stsc120882g00008 992 ProSiteProfiles IQ motif profile. 357 386 IPR000048 GO:0005515
Stsc120882g00008 992 Pfam Myosin head (motor domain) 3 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00008 992 Coils Coil 419 446 - -
Stsc120882g00008 992 ProSiteProfiles IQ motif profile. 261 290 IPR000048 GO:0005515
Stsc120882g00008 992 ProSiteProfiles Myosin motor domain profile. 1 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00008 992 PANTHER MYOSIN 3 303 - -
Stsc120882g00008 992 SMART DIL_2 805 912 IPR002710 -
Stsc120882g00008 992 Gene3D Kinesin motor domain 94 170 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120882g00008 Stsc-Chr120882 58963 77484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120882g00008 3 979 Myosins gene family AT4G33200 62.562 0.0 1222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120882g00008 K10357 - gmx:100790815 1435.62