Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120882g00004 ATGAGTTTTCGTAAGGGCGCTAAGGTTTGGGTCCAGGATAGGCTTGATGCTTGGATACCTGCTGAAGTTGTTGACTCCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGTCAACAGTAGTCGTATTCAGCTCTTCACTGACTCCGGCAAGAAGGTTTTTGCTACACCGGATAAGCTGTTCCCGCGGGACGCGGATGAAGAAGAGCATGGTGGAGTTGAAGACATGACTAGGCTGGTTTACTTGAATGAGCCAGGGGTGTTGTACAATCTTCGAAGGAGATATGCTCTCAATGATATCTATACTTATACAGGAAGCATTTTAATAGCTGTTAATCCCTTTACAAAGCTTCCTCATTTGTATGAAATCCATATGATGGAGCAGTATAAAGGAGCTCCATTCGGTGAGCTTAGCCCACATGTTTTTGCTGTTGCAGATGCATCTTATAGGGCGATGATGAGTGAAGGTAAAAGTCAATCTATCTTGTATCTTACCTTTGTTGGTGGACGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTGGAATCAAATCCACTTTTAGAGGCATTTGGTAATGCAAGGACAGTCAGAAATGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAGTGGTAGAATATCTGGTGCTGCAATTAGAACATACTTATTGGAAAGATCACGAGTAGTGCAGATAACGGATCCAGAAAGAAATTATCACTGTTTTTATCAGTTGTGTGCATCTGAAAGGGATGCTGAAAAGTATAAGCTAGAACATCCAAGCCACTTCCACTATTTAAATCAAAGTAAAATCTATGAACTTGATGGTGTAAGTAATGCTGAAGAATATGTGAAGACGAGGCGGTCAATGGATATTGTTGGCATAAGTCATGAGGACCAGGAGGCCATATTTCGTGTCTTAGCTGCGATTTTACATTTGGGAAATATTGAATTTTCTCCTGGAAAAGAACATGACTCGTCAGCGGTAACAGATGACAAATCAAGATTTCATATGCAGATGGCTGCTGAGCTTTTCATGTGCGATGTAGAGCTACTGCTAGCAACATTGTGTACTCGCTCAATACAAACCCGAGAGGGAAATATAATTAAAGCTCTTGATTGTAATGCTGCTGTTGCTGGACGGGATGCTTTGGCAAAAACGGTTTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATAGGTCTGTTGGTCAAGATACAAATTCCCAGATTCAAATTGGAGTATTGGATATCTATGGTTTTGAATGCTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTCAAGATGGAGCAGGAAGAGTATGGTAGAGAAGAAATAAACTGGAGTTACATTGAATTTGTGGACAACCAAGATGTGTTAGATTTGATTGAAAAGGTTACATATCACACAGATTCCTTCTTAGACAAAAATCGTGATTATGTTGTAGTAGAACACTGTAATCTATTATCTTCTTCAAAATGCCCCTTTGTGTCTGGTCTTTTTCCTTTGCTACCAGAGGAATCGTCAAGATCGTCTTACAAGTTTTCATCTGTGGCATCCAGATTTAAGCAACAACTTCAAGCTCTTATGGAGACCCTTAAATCAACAGAGCCTCATTACATACGATGCGTGAAGCCAAATTCTTTGAACCGACCACAAAAGTTTGAGAATTCTAGTGTCATACACCAATTGCGATGCGGGGGTGTCCTTGAAGCTGTTCGTATAAGCCTAGCTGGTTACCCTACACGAAGGACTTATTCAGAGTTTGTGGATCGCTTTGGCTTAATAGCCCCTGAATTTATGGATGGGAGTTATGATGATAGAGTTGCAACTGAGAAAATTCTGAAAAAGCTCAAGCTTGACAACTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGCATTTTAGACTCCAGACGTGCTGAGGTTCTAGACAATGCTGCAAAATGTATTCAACGGCGGCTGAGGACATTTATTTTACACAGGGATTTCATCTCACTCAGAGCTGCTGCAGTTTCAATTCAGTCATGCTGCAGGGGGTGCATTGCTCGAAAGATTTACGTTGCTAAAAGGGAGACAGCTGCAGCGATCTCCATTCAGAAATACATTCGCATGTGTCTAAAGAGGTGTGCTTACTTGGAACTATGTTCATCTGCTGTCATCATTCAGTCACATGTCCGAGGCTTCACAACTAGAGAAAGATTCTTGCATGGAAAGGAACATAGAGCTGCTACTGTTATTCAGGCATATTGGAGGATGTCCAAGGTTAGGTCAGCTTTCAAACAATATCAAGCTTCTATTGTGGCAATACAATGCCTTTGGCGGCGTAAACGAGCTAAAAGAGAGCTTCGGAGACTTAAACAGGAGGCTAATGAGGCTGGTGCTCTCCGTTTAGCTAAGAGTAAACTTGAGAAGCAATTGGACGAGCTGACATGGCGATTGCATCTTGAAAAGAAAATGAGGTTGGAATTGTCAATGAAGGAAAAATCTGCTTTAGAAAAAGAGTTGGTCATAGTGGATGAAGTACGGAAGGAAAATGCTCTTCTAAAGGATTCTTTGAGTGCCTTCGAAAAGAAGTACACAAATTTGGAACTTGAACTCATGAATGCTCAAAAAGGCCGTAATGAAATGGTTGAGAAACTGAGAGAGTTTGAACAGAAGTGTTCTCAACTGGAGCAAAGTGTGAAGAGCCTTGAGGGGAAGATATTGAATTTAGAGGAAGAAAATCATGTGCTACGTCAGAAAGCCTTAAGTGCTGCTCCTAAGAGTAACCGTTCAGGGCTTGCAAAGTCACTGTCAGAGAAATATTCGAGTGTAATTGCCTCCCGTAATGAACGAAAGCCCGTATTTGAGTCACCCACACCAACAAAACTCATTGCTCCCTTTACGTCAGGCTTGACAGACTCTCGTCGTCCTAGGTTAACAGCAGAGAGGCACCAGGATAACTATGAATTTCTTTCTAGTTGTATCAAAGAAAATTTGGGATTTAAAAACGGTAAACCTCTGGCAGCTCGTATCATATACAAATGTCTTCTTCAATGGCATGCCTTCGAATCTGAGCGCACAGCTATTTTTGATTACATAATTGAAGGCATAAATGATGTTTTAAAGGTTAAGGATGATGGTTCTGTATTGCCATATTGGCTTTCAAATGCATCTGCGCTGCTCTGCCTGTTACAGAGAAACGTACGTTCAAATGGCTTTTTAACTCCAACTGCTCATCGTCATACGGGATCTTCGGGTTTCAGCAACCGTTTAGGCCATGGACCAAAATCTCCAATGAAGCTTATTGGATATGATGATGGTTTTTCACATGTGGAGGCGAGATATCCGGCTATACTTTTTAAACAACAGATCACTGCTTGTGTAGAGAAAATATTTGGTCTTATAAGAGATAATTTAAAAAGGGAACTCTCCCCTCTTCTTGGGCTATGTATTCAGGCACCCAAAGCAGGACGGCCCCTTGGTGGAAAGTCAACCAGATCTCCTGGTACATCACCTCAACAATCATCTGGCGGTCAATGGGACAATATTGTCAAATTCTTGGATGCACTCATGAGCCAACTTCGTGAAAACCATGTGCCTTCCTTCTTCATCCGCAAGCTAGTTACCCAGGTCTTTTCCTTCATCAATATCACCCTTTTTAACAGTCTTCTCTTGCGGCGTGAATGTTGTACATTCTCAAACGGTGAGTATGTGAAGTCTGGTCTAGCAGAATTGGAGAAGTGGATAGGCAATGCAACAGAGGAGTATGCAGGAACATCTTGGCATGAGCTTAATTATATAAGACAAGCTGTTGGCTTCTTGGTAATACATCAGAAGAGGAAGAAATCTTTGGAAGAGATTTGCCAAGATCTTTGCCCGGCACTGACAGTGAGGCAGATATATCGAATCAGCACTATGTACTGGGACGACAAGTATTCAACCCAGAGTGTATCCAACGAGGTAGTCAGTGAAATGAGGGAAATTGTTAGTAAGGACAATCAGAACGTGACCTCAAATTCTTTCCTGTTGGATGACGATCTGAGGTACAATTAA 4119 0.4161 MSFRKGAKVWVQDRLDAWIPAEVVDSGGGGGGGGGGGVNSSRIQLFTDSGKKVFATPDKLFPRDADEEEHGGVEDMTRLVYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYEIHMMEQYKGAPFGELSPHVFAVADASYRAMMSEGKSQSILYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSSGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDAEKYKLEHPSHFHYLNQSKIYELDGVSNAEEYVKTRRSMDIVGISHEDQEAIFRVLAAILHLGNIEFSPGKEHDSSAVTDDKSRFHMQMAAELFMCDVELLLATLCTRSIQTREGNIIKALDCNAAVAGRDALAKTVYARLFDWLVDKINRSVGQDTNSQIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGREEINWSYIEFVDNQDVLDLIEKVTYHTDSFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLLPEESSRSSYKFSSVASRFKQQLQALMETLKSTEPHYIRCVKPNSLNRPQKFENSSVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIAPEFMDGSYDDRVATEKILKKLKLDNFQLGRTKVFLRAGQIGILDSRRAEVLDNAAKCIQRRLRTFILHRDFISLRAAAVSIQSCCRGCIARKIYVAKRETAAAISIQKYIRMCLKRCAYLELCSSAVIIQSHVRGFTTRERFLHGKEHRAATVIQAYWRMSKVRSAFKQYQASIVAIQCLWRRKRAKRELRRLKQEANEAGALRLAKSKLEKQLDELTWRLHLEKKMRLELSMKEKSALEKELVIVDEVRKENALLKDSLSAFEKKYTNLELELMNAQKGRNEMVEKLREFEQKCSQLEQSVKSLEGKILNLEEENHVLRQKALSAAPKSNRSGLAKSLSEKYSSVIASRNERKPVFESPTPTKLIAPFTSGLTDSRRPRLTAERHQDNYEFLSSCIKENLGFKNGKPLAARIIYKCLLQWHAFESERTAIFDYIIEGINDVLKVKDDGSVLPYWLSNASALLCLLQRNVRSNGFLTPTAHRHTGSSGFSNRLGHGPKSPMKLIGYDDGFSHVEARYPAILFKQQITACVEKIFGLIRDNLKRELSPLLGLCIQAPKAGRPLGGKSTRSPGTSPQQSSGGQWDNIVKFLDALMSQLRENHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEICQDLCPALTVRQIYRISTMYWDDKYSTQSVSNEVVSEMREIVSKDNQNVTSNSFLLDDDLRYN 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120882g00004 1372 Gene3D - 488 559 - -
Stsc120882g00004 1372 ProSiteProfiles IQ motif profile. 744 771 IPR000048 GO:0005515
Stsc120882g00004 1372 Gene3D - 603 666 - -
Stsc120882g00004 1372 ProSiteProfiles IQ motif profile. 767 796 IPR000048 GO:0005515
Stsc120882g00004 1372 FunFam Myosin heavy chain 243 297 - -
Stsc120882g00004 1372 ProSiteProfiles Myosin motor domain profile. 71 668 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 PRINTS Myosin heavy chain signature 472 500 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 PRINTS Myosin heavy chain signature 101 120 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 PRINTS Myosin heavy chain signature 419 447 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 PRINTS Myosin heavy chain signature 187 214 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 ProSiteProfiles IQ motif profile. 694 723 IPR000048 GO:0005515
Stsc120882g00004 1372 Coils Coil 866 942 - -
Stsc120882g00004 1372 SMART DIL_2 1228 1335 IPR002710 -
Stsc120882g00004 1372 Coils Coil 803 833 - -
Stsc120882g00004 1372 Gene3D Kinesin motor domain 71 430 IPR036961 -
Stsc120882g00004 1372 Gene3D - 720 768 - -
Stsc120882g00004 1372 Gene3D - 769 818 - -
Stsc120882g00004 1372 Gene3D - 669 719 - -
Stsc120882g00004 1372 ProSiteProfiles Dilute domain profile. 1053 1353 IPR002710 -
Stsc120882g00004 1372 SMART MYSc_2a 65 669 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 SMART iq_5 670 692 IPR000048 GO:0005515
Stsc120882g00004 1372 SMART iq_5 766 788 IPR000048 GO:0005515
Stsc120882g00004 1372 SMART iq_5 693 715 IPR000048 GO:0005515
Stsc120882g00004 1372 SMART iq_5 741 763 IPR000048 GO:0005515
Stsc120882g00004 1372 SMART iq_5 718 740 IPR000048 GO:0005515
Stsc120882g00004 1372 SMART iq_5 789 811 IPR000048 GO:0005515
Stsc120882g00004 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 822 IPR027417 -
Stsc120882g00004 1372 CDD MyosinXI_CBD 1004 1369 IPR037975 GO:0007015
Stsc120882g00004 1372 Pfam IQ calmodulin-binding motif 745 762 IPR000048 GO:0005515
Stsc120882g00004 1372 Pfam IQ calmodulin-binding motif 768 788 IPR000048 GO:0005515
Stsc120882g00004 1372 Pfam IQ calmodulin-binding motif 720 739 IPR000048 GO:0005515
Stsc120882g00004 1372 Pfam IQ calmodulin-binding motif 695 714 IPR000048 GO:0005515
Stsc120882g00004 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 764 IPR027417 -
Stsc120882g00004 1372 MobiDBLite consensus disorder prediction 1180 1201 - -
Stsc120882g00004 1372 MobiDBLite consensus disorder prediction 1186 1201 - -
Stsc120882g00004 1372 Pfam DIL domain 1229 1332 IPR002710 -
Stsc120882g00004 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 718 IPR027417 -
Stsc120882g00004 1372 PANTHER MYOSIN 63 488 - -
Stsc120882g00004 1372 Gene3D Myosin VI head, motor domain, U50 subdomain 298 409 - -
Stsc120882g00004 1372 Gene3D Kinesin motor domain 560 598 IPR036961 -
Stsc120882g00004 1372 Gene3D - 431 487 - -
Stsc120882g00004 1372 Gene3D - 243 297 - -
Stsc120882g00004 1372 Gene3D Myosin VI head, motor domain, U50 subdomain 503 537 - -
Stsc120882g00004 1372 ProSiteProfiles IQ motif profile. 790 819 IPR000048 GO:0005515
Stsc120882g00004 1372 Pfam Myosin head (motor domain) 73 488 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc120882g00004 1372 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 65 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120882g00004 Stsc-Chr120882 21806 38808 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120882g00004 1 1369 Myosins gene family AT4G33200 62.809 0.0 1843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120882g00004 K10357 - cave:132184894 2073.9