Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120881g00026 ATGGGTGCTTATGATCAAGGTTCTAATAATATCAGTCTAGTGCCTTTGGACTCTTCTAGGAAGAGGAAAAGTAGGAGTAGAAGAGACGGGTCTAGATCTGTGGCTGAGACTCTGCAGAAGTGGAAGAAATACAATGAGACTCTTCAGTCTGGTAAAGAGGAAGGAAAGCCAACTCGAAAGGCTCCGGCGAAGGGTTCGAAGAAAGGGTGCATGAAAGGGAAAGGAGGACCCCAAAATTCACAGTGTAATTACAGGGGTGTTAGGCAGAGGACATGGGGGAAATGGGTTGGTGAGATTAGGGAGCCGAATAGAGGGAGTAGGCTTTGGTTGGGTACTTTCTCCACTGCCCAAGAAGCTGCCCTTGCTTATGATGAAGCTGCTAGGGCCATGTATGGTTCAAGTGCAAGGCTAAACTTTCCACATATCACGGATTATAGTTCTATTAAGGAGTCAATGAAGGACTCTTCAGTGGTTGCAACTACTTCTTGTTCCGGTTCTTCAGCTGCAACCCCTGCGGCTTCTGACACGACTACTATATCAAATCATTCGGAGGTTTGTGCGGCTGAGGATGTTAAGGAGCAAGTGCGACTTGGCGAGGTGAATGGTACTGTTAATGGCATTCATAAGGCTTATGACTCTGTTGGTTCCCCAACTAGCAAAGTGAAGCAAGAGATACTGGATGAGCCTGAGGTTCTCACTGACCCTGGGGGAGTTGAAATCCAGAATTTACAACGTGGTGATGAACAAGTTGCCATGGATGATGTAAATAAAGATCAGATGGACTTGTCCTGGATTGATAATTTTGACTTTGAAAGTGGTGATTACTTGAAGAACTTCTCCATGGATGAGCTATTCCAGGTGGAGGAGCTTCTAGGGGACATAGACAAAAATCCAATTGAGGATTCTGCATTGATGCAAGTCTTGGATTTTGGTCAAATGGATAAAGGTCTGGATTTCAGTCAAATGAATTTCTCTGTTGACAGTAGTCATCAAGCTGATGTGCCTTCAAGCTATTTGTATCAGTTGGAGAATCCGGATACGAAGTTGTTGGGAAGTTTGCCACATATGGATCAAATTCCATTGGATGCTAATTATGGCTTGGATTTCCTAAAAGCGAAGTGTAATAATGGCGGCGGCGGCGGGGAAGAACATCGCTTTATTGATTTGAAATGCCTGAACAATGATCCAACAGTTAATATGCAAACAAAGAAGGATAATTAG 1221 0.4406 MGAYDQGSNNISLVPLDSSRKRKSRSRRDGSRSVAETLQKWKKYNETLQSGKEEGKPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGSSARLNFPHITDYSSIKESMKDSSVVATTSCSGSSAATPAASDTTTISNHSEVCAAEDVKEQVRLGEVNGTVNGIHKAYDSVGSPTSKVKQEILDEPEVLTDPGGVEIQNLQRGDEQVAMDDVNKDQMDLSWIDNFDFESGDYLKNFSMDELFQVEELLGDIDKNPIEDSALMQVLDFGQMDKGLDFSQMNFSVDSSHQADVPSSYLYQLENPDTKLLGSLPHMDQIPLDANYGLDFLKAKCNNGGGGGEEHRFIDLKCLNNDPTVNMQTKKDN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120881g00026 406 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Stsc120881g00026 406 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Stsc120881g00026 406 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Stsc120881g00026 406 MobiDBLite consensus disorder prediction 1 17 - -
Stsc120881g00026 406 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Stsc120881g00026 406 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 359 - -
Stsc120881g00026 406 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Stsc120881g00026 406 MobiDBLite consensus disorder prediction 1 85 - -
Stsc120881g00026 406 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Stsc120881g00026 406 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Stsc120881g00026 406 MobiDBLite consensus disorder prediction 18 36 - -
Stsc120881g00026 406 MobiDBLite consensus disorder prediction 46 61 - -
Stsc120881g00026 406 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Stsc120881g00026 406 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120881g00026 Stsc-Chr120881 140689 142980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120881g00026 8 389 AP2-EREBP Transcription Factor Family AT2G40340 38.501 8.61e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120881g00026 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120881g00026 - K09286 gmx:100800134 433.721