Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120881g00020 ATGGGTGCTGGGAATTCACCGTGTGCCTCATGCAAGCTTCTGAGACGCAGGTGCACCAAAGATTGCGCCTTTGCTCCTTATTTCCCTGCCGATGAACCCCACAAGTTTGCCATCGTCCACAAAGTTTTTGGCGCTAGCAACATCAGCAAAATGTTGCAGGAACTTCCGGTGGAGCAAAGAGCAGATGCGGTGAGCAGCCTAGTGTACGAGGCGAATGCGAGGGTCCGGGATCCGGTGTACGGGTGTGTAGGAGCCATATCGTACCTTCAAAATCAAGTGTCTGAGCTCCAAATGCAGCTAGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGCAGCAGCATCAGCAAGAAGAGCCATCTGCAATGATGATGATGCAACCACAACTGCTCCAAAATGAAAATGAACTCTCTTCTCCTCATCTTCAATATTTTACTACTTTAGGATCTTCTTCTTCTTCTACCAATAATGTAATTCATGAATCCTTCAAGAGAGAAAGTAGTGTTTTTGGATATGACATGGTTTCTTGA 531 0.4652 MGAGNSPCASCKLLRRRCTKDCAFAPYFPADEPHKFAIVHKVFGASNISKMLQELPVEQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQHQQEEPSAMMMMQPQLLQNENELSSPHLQYFTTLGSSSSSTNNVIHESFKRESSVFGYDMVS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120881g00020 176 Coils Coil 86 106 - -
Stsc120881g00020 176 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Stsc120881g00020 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 138 - -
Stsc120881g00020 176 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120881g00020 Stsc-Chr120881 103632 104349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120881g00020 2 113 AS2 family AT2G30130 90.179 1.34e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc120881g00020 LOB 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120881g00020 - - sind:105160852 246.899