Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120881g00010 ATGAGCAAGAGCTTGAAACTAAGATGGTTCAAGGATTTTAGTGGAGTTCTGAGGTTTGTGGTGGTGGTGTGTTTTTTACTTCAGAACTTGGGTTTGTGCTTCACTTTGAATGAAGAAGGTAAAGCTCTTCTGAAGTTGAGGGAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGCAGTTTTTGACCCTTGCAACTGGTTTGGTGTTGAGTGCTCAGATGGAAGAGTAGTGGTCTTGAATTTGAAAGATCTTTGCCTTGGAGGAACTCTTGCACCTGAGCTGGTCAACCTTGTTCACCTAAAGTCCATTATTTTGCGGAACAACTCGTTCTCTGGAACCATCCCCGAAGAAATCGAAGAGCTGAAAGAGTTGGAGGTTTTGGATTTGGGATTTAACAACTTCAGTGGACATATACCTGTTGGTCTTGGGAGTAATACCTCACTGTCAATCCTTTTGTTGGACAACAATGATTTTCTTGTCAGTTTCAACCCCGAAATCAATGAACTGAAGATGCTCTCAGAAAGTCAAGTAGATAAAAACCAGCTAGTTGATGCAGCTAAGAGGCCTGCTTGTACAAGAAGATCCTTCACATGGCATGTAAATGTTGATCAAAGTAATGGTATTCGGAGTCTACTGGAAAGTCCTAAGACGAATTACCACCGTGTCGGAAATGATAATTACAATCGTGAATATAATCCACCACTTAGTAGCCCTGCTTCATCACCACCCCGCTGGCCGGCCTCCCCTCCTCCTCCTTCCAAGTCTGCACCAGGCTCTGAAGTAGCATCTAAAAGTTCCACTTCGAAGAATCACCGAGCACCGGTTGTGGCTGGAATCATAGGTGGTGTTGCGTTCCTTGTTATTACATGCATTGGCATATATCTCTGCAAGACCAACAAGGTAACTAATGTCAGGCCTTGGGCCACAGGACTAAGTGGACAGCTTCAGAAGGCATTTGTGACCGGTGTGCCAAAGCTAAAGAGATCAGAGATTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTACTTCACCCATTGGCACAATGTATAAAGGGACTTTGTCTAGTGGTGTTGAAATAGCAGTAGCTTCTGTTTCGGTAACATCATCAAAGGATTGGGCAAGAACTTTAGAAGCACAGTTTAGAAAGAAGATAGAGATGTTATCCAAAGTGAACCACAGGAATTTTGTCAATCTTATTGGGTATTGTGATGAAGAGGAGCCTTTCACCAGAATGATGGTTTTCGAATACGCCCCGAATGGAACACTATTTGAGCATTTACATATAAAAGAAGCTGAGCACTTGGACTGGCCAACAAGACTTAGAATCGCGACCGGAACAGCTTACTGCCTACAACATTTGCACCAGTTGGACCCTTCTATGACTCTTACCAACCTGAATTCTTCAGTTCTCCATCTAACCGAGGACAACGCCGCGAAAATCTCAGATTTTAGTTTCTCATATGAAACAGCTTCGGCCGAGACAAAATCTTGGGGCAAAAAACACATTGAGATTCCACCAGCAACACTTGAGAGCAATGTTCATAGCTTTGGTATCATGCTATTAGAACTGGTAACAGGAAGGCCTTGTTATTCGGTGGACAATATTAATGGCTTGATTGAGAATTGGGCAACACACTATCTTGAAGGTGACAAACCCCTCAAAGAAGTGGTTGATCCAACACTAGCATCTTACCAAGAGGATCAGGTAGAACAAGTTGCTTCACTGATAAAATATTGTTGCAATCCTGAATCAGAGAAGAGGCCAACAATGAAAGAAGTGAGTGTGAGGTTGAGAGAGATAACAAAACTAGCACCTGAAGCAGCAGTTCCAAGGCTTTCTCCACTTTGGTGGGCTGAACTTGAGATTTCTAATGCAGATGCAATATGA 1914 0.4279 MSKSLKLRWFKDFSGVLRFVVVVCFLLQNLGLCFTLNEEGKALLKLRERIVSDPFGALSNWVDDEAVFDPCNWFGVECSDGRVVVLNLKDLCLGGTLAPELVNLVHLKSIILRNNSFSGTIPEEIEELKELEVLDLGFNNFSGHIPVGLGSNTSLSILLLDNNDFLVSFNPEINELKMLSESQVDKNQLVDAAKRPACTRRSFTWHVNVDQSNGIRSLLESPKTNYHRVGNDNYNREYNPPLSSPASSPPRWPASPPPPSKSAPGSEVASKSSTSKNHRAPVVAGIIGGVAFLVITCIGIYLCKTNKVTNVRPWATGLSGQLQKAFVTGVPKLKRSEIEAACEDFSNVIGTSPIGTMYKGTLSSGVEIAVASVSVTSSKDWARTLEAQFRKKIEMLSKVNHRNFVNLIGYCDEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWPTRLRIATGTAYCLQHLHQLDPSMTLTNLNSSVLHLTEDNAAKISDFSFSYETASAETKSWGKKHIEIPPATLESNVHSFGIMLLELVTGRPCYSVDNINGLIENWATHYLEGDKPLKEVVDPTLASYQEDQVEQVASLIKYCCNPESEKRPTMKEVSVRLREITKLAPEAAVPRLSPLWWAELEISNADAI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120881g00010 637 SUPERFAMILY Protein kinase-like (PK-like) 326 605 IPR011009 -
Stsc120881g00010 637 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Stsc120881g00010 637 FunFam Inactive receptor-like serine/threonine-protein kinase 317 425 - -
Stsc120881g00010 637 Pfam Protein tyrosine and serine/threonine kinase 346 604 IPR001245 GO:0004672|GO:0006468
Stsc120881g00010 637 MobiDBLite consensus disorder prediction 221 242 - -
Stsc120881g00010 637 Gene3D Ribonuclease Inhibitor 35 220 IPR032675 -
Stsc120881g00010 637 Gene3D Transferase(Phosphotransferase) domain 1 426 617 - -
Stsc120881g00010 637 SUPERFAMILY L domain-like 37 191 - -
Stsc120881g00010 637 MobiDBLite consensus disorder prediction 243 263 - -
Stsc120881g00010 637 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120881g00010 637 MobiDBLite consensus disorder prediction 221 275 - -
Stsc120881g00010 637 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Stsc120881g00010 637 FunFam Nuclear pore complex protein NUP107 36 194 - -
Stsc120881g00010 637 PANTHER PROTEIN MALE DISCOVERER 2 18 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120881g00010 Stsc-Chr120881 39865 43291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120881g00010 11 613 Receptor kinase-like Gene Family AT5G16000 27.404 9.13e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc120881g00010 PK_Tyr_Ser-Thr 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120881g00010 - - gmx:100820416 820.461