Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120881g00001 GAACATGCTGTGACTGCCATGTTCAACCTATCAATCTATGACAACAACAAGGTTCTGATCATGTCGGCCGGCGCAGTGGACAAAATAGTCCAATTTCTAGAACAAGGCAAAACAATGGAAGCCAGAGAGAATGCTGCAGCAACTATATTCAGCTTGACTATGCTAGATGAATGCAAGGTTCAAATCGGGGCACGGCCCAGGGCGGTTCCTGCATTAGTACTGCTCTTGAAAGAAGGCACACCAATTGGGAAAAGGGATGCAGCAACTGCACTATTCAACCTTGCAGTTTACAATCCAAACAAATCAATAATTGTGAATTCTGGTGCAGTTGATGTGCTTATTGAATTGCTAATGGATGATAAAGCTAGCATTACTGATGATGCATTATCTGTTCTTGCTTTGTTACTTGGTTGCTCAAAAGGACTACAAGAAATAAGGAATAGCAGAGAATTGGTGCCTCTTCTTATTGATCTTCTAAGATTTGGATCAGTGAAAGGGAAGGAAAATTCTATTACACTTCTCTTAGGATTGTGTAAGGAAGAGACCGAGGTGGTTGCGCGGCGGCTGTTGGCGAATCCACGAAGCGTGCCATCGCTTCAAAGCTTGGCTGCTCATGGCTCCTTGAGAGAGCTAGGAGGAAGGCTGATGCATTGTTAA 657 0.4384 EHAVTAMFNLSIYDNNKVLIMSAGAVDKIVQFLEQGKTMEARENAAATIFSLTMLDECKVQIGARPRAVPALVLLLKEGTPIGKRDAATALFNLAVYNPNKSIIVNSGAVDVLIELLMDDKASITDDALSVLALLLGCSKGLQEIRNSRELVPLLIDLLRFGSVKGKENSITLLLGLCKEETEVVARRLLANPRSVPSLQSLAAHGSLRELGGRLMHC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120881g00001 218 SUPERFAMILY ARM repeat 1 203 IPR016024 -
Stsc120881g00001 218 SMART arm_5 97 137 IPR000225 GO:0005515
Stsc120881g00001 218 SMART arm_5 13 54 IPR000225 GO:0005515
Stsc120881g00001 218 SMART arm_5 58 96 IPR000225 GO:0005515
Stsc120881g00001 218 SMART arm_5 138 179 IPR000225 GO:0005515
Stsc120881g00001 218 PANTHER U BOX DOMAIN-CONTAINING 1 205 - -
Stsc120881g00001 218 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 67 109 IPR000225 GO:0005515
Stsc120881g00001 218 FunFam RING-type E3 ubiquitin transferase 38 212 - -
Stsc120881g00001 218 Pfam Armadillo/beta-catenin-like repeat 98 133 IPR000225 GO:0005515
Stsc120881g00001 218 Gene3D - 1 212 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120881g00001 Stsc-Chr120881 63 719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120881g00001 1 213 U-box Gene Family AT3G46510 45.070 3.87e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120881g00001 - - gmx:100793498 342.813