Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120880g00024 ATGGGAACTTCAGAAGCAAAAGAAGAAGAGCTTGTGAAGAAGATAGAGAGGCTTGAAGCTGGTCATGTTCAGCTCAAGCATGAGATGTCCAAGCTGAAGCTTTCTGAACGCCGCCACCATCACCGCCACAGGTCACACTCCTTGTCGCCGCAGCGTTCCTGGCTTGGCGGTGGTGGCGGTGGCGGTGGTGGTGGTTGTAACAACAAAGGGTCTTCTTCTTCACCATTGAAGAGGGAGAGTCGTAGCAGCAATAATCTTAATCAGAATCAGAATGAAAATGGTGATGGTGATGGTGATGGTGTGAAGGTTGGGCTTAGTGAGAAGCATTATATGAACATTTTGCAGTCAATGGGGCACTCACTTCATATCTTGGATCTTCATTGGCGTATCATATATTGGAATCCTAGTGCGGAAAATCTGTACGGTTATGCAGCGGTGGAGGCTCTTGGAAAAGATGGGATTGAGCTGCTTGTAGACCCTATTGATTACGGCTTAGCATATGATGTATTCAACCATGTCACTGTGGGGGAGAGTTGGAGTGGCCAGTTCCCTGTCAAGAACAAGATGGGGGAGAAATTTTCGGTTGTGGCAACCAACACGCCATTCTATGGTGACGACGGGAAGTTGATTGGGGTTATCTGTGTGTCCATCGATTCAAGACCCTTTCTTGAAACCCAAGCTACTTTATCGGGTGTGAAGAATGCTGCACCAGATTCAGACTCGGATTATAACCGTCTCAAGAGTGGCATTTCAAATAAACTTGGCCTTGACTCTCACCAGCCACTTCAATTTGCTCTAGCATCCAAAATTTCTAATTTGGCATCAAAGGTGGGTAATAAAGTTAAGTCAAGAATGAGGACAGGAGAAAACAGTCTTGACCGTGATGGTTGGAGCGGAGAACACCATCATTCTGATCAGAGTTTCTCGGGTTGTGTTTTTTATGACCAGAAAGAAGATGGTAATTCCAGTGGAGCTAGCACTCCCAGAGGTGATGTACCGCCATCTCCCTTCGGTGTATTTTATCATGTTGAAGAGAAATCACAAGCGAAATCTTCAAGAGACACTGGTGACGATGCCGAAGGAAAACCAATTCACAAGATCATAACTTCTAAAGCTGAAGCATGGATTCAAAAGAGAACATTGTCATGGCCGTGGAGAGGAAATGATCGAGCAGGATCTGAGGGAAGAAATGTTCCTAATGCTTGGTCTTTGTTGCAGAATGATCAAGAAAATGAACTGGTTAATCGGATGAATCTTTCTTCCGAGTCCAAGATGGAAGTCCAGGCAGGTTCTTGTGGAACTGTATACCATGCCATGTGGTATGGATCAGATGTTGCAGTCAAAGTATTCTCAAGGCAAGAATATTCAGAAGATGTGATACTATCTTTTAGACAAGAGGTATCTGTCTTGAAAAGACTTCGCCATCCAAATATTATTCTCTTCATGGGGGCAGTGACTTCTCCTCAATGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGTTTGCTCCAAAGAAATTCATCCAAACTTGACTGGAGACGGAGAGTTCATATGGCTTTAGATATCGCACGTGGTGTGAATTATCTTCATCGTTGCAGCCCCCCTATTGTTCATCGAGATTTGAAGTCTTCAAATCTCCTAGTTGACAGGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGCCTAAAGCATGAAACATATCTCTCAACTAAAACAGGAAAGGGCACGCCTCAATGGATGGCGCCAGAAGTTCTTCGAAATGAACCCTCGGATGAGAAGTCCGATGTGTACAGCTTTGGGGTGATATTGTGGGAACTTGCAACTGAAAAGATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGGGCTGTAGGGTTTATGAACCATCGGTTAGAAATTCCGGCAGATGTTGATCCGCAGTGGGCTTCTATAATGGAGAGCTGCTGGCATAGTGATCCGACTCAGCGACCAACATTCCAGGAACTTGTCGAAAGGCTCAGAGAAATGCAGAGACGGTATACCATCCAGTTCCAGGCGGCTCGTTCTGCTGCCAATGGAAGCAATCAGAAGGAATCTTAA 2100 0.4524 MGTSEAKEEELVKKIERLEAGHVQLKHEMSKLKLSERRHHHRHRSHSLSPQRSWLGGGGGGGGGGCNNKGSSSSPLKRESRSSNNLNQNQNENGDGDGDGVKVGLSEKHYMNILQSMGHSLHILDLHWRIIYWNPSAENLYGYAAVEALGKDGIELLVDPIDYGLAYDVFNHVTVGESWSGQFPVKNKMGEKFSVVATNTPFYGDDGKLIGVICVSIDSRPFLETQATLSGVKNAAPDSDSDYNRLKSGISNKLGLDSHQPLQFALASKISNLASKVGNKVKSRMRTGENSLDRDGWSGEHHHSDQSFSGCVFYDQKEDGNSSGASTPRGDVPPSPFGVFYHVEEKSQAKSSRDTGDDAEGKPIHKIITSKAEAWIQKRTLSWPWRGNDRAGSEGRNVPNAWSLLQNDQENELVNRMNLSSESKMEVQAGSCGTVYHAMWYGSDVAVKVFSRQEYSEDVILSFRQEVSVLKRLRHPNIILFMGAVTSPQCLCIVTEFLPRGSLFRLLQRNSSKLDWRRRVHMALDIARGVNYLHRCSPPIVHRDLKSSNLLVDRNWTVKVGDFGLSRLKHETYLSTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPADVDPQWASIMESCWHSDPTQRPTFQELVERLREMQRRYTIQFQAARSAANGSNQKES 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120880g00024 699 CDD PAS 123 218 IPR000014 -
Stsc120880g00024 699 MobiDBLite consensus disorder prediction 282 302 - -
Stsc120880g00024 699 MobiDBLite consensus disorder prediction 66 95 - -
Stsc120880g00024 699 SMART pas_2 108 175 IPR000014 -
Stsc120880g00024 699 CDD STKc_MAP3K-like 430 673 - -
Stsc120880g00024 699 Gene3D Transferase(Phosphotransferase) domain 1 499 699 - -
Stsc120880g00024 699 MobiDBLite consensus disorder prediction 33 48 - -
Stsc120880g00024 699 MobiDBLite consensus disorder prediction 16 102 - -
Stsc120880g00024 699 SUPERFAMILY PYP-like sensor domain (PAS domain) 112 215 IPR035965 -
Stsc120880g00024 699 FunFam PAS domain-containing protein tyrosine kinase family protein 499 690 - -
Stsc120880g00024 699 Gene3D PAS domain 119 220 - -
Stsc120880g00024 699 ProSiteProfiles PAS repeat profile. 106 177 IPR000014 -
Stsc120880g00024 699 MobiDBLite consensus disorder prediction 16 32 - -
Stsc120880g00024 699 Gene3D Phosphorylase Kinase; domain 1 418 498 - -
Stsc120880g00024 699 Pfam Protein tyrosine and serine/threonine kinase 426 673 IPR001245 GO:0004672|GO:0006468
Stsc120880g00024 699 MobiDBLite consensus disorder prediction 280 338 - -
Stsc120880g00024 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Stsc120880g00024 699 Pfam PAS fold 109 216 IPR013767 GO:0006355
Stsc120880g00024 699 Coils Coil 8 35 - -
Stsc120880g00024 699 PRINTS Tyrosine kinase catalytic domain signature 534 552 IPR001245 GO:0004672|GO:0006468
Stsc120880g00024 699 PRINTS Tyrosine kinase catalytic domain signature 495 508 IPR001245 GO:0004672|GO:0006468
Stsc120880g00024 699 PRINTS Tyrosine kinase catalytic domain signature 644 666 IPR001245 GO:0004672|GO:0006468
Stsc120880g00024 699 PRINTS Tyrosine kinase catalytic domain signature 581 591 IPR001245 GO:0004672|GO:0006468
Stsc120880g00024 699 PRINTS Tyrosine kinase catalytic domain signature 600 622 IPR001245 GO:0004672|GO:0006468
Stsc120880g00024 699 ProSiteProfiles Protein kinase domain profile. 421 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120880g00024 699 FunFam Serine/threonine-protein kinase isoform 1 415 499 - -
Stsc120880g00024 699 SMART serkin_6 421 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120880g00024 699 NCBIfam PAS domain S-box protein 106 218 IPR000014 -
Stsc120880g00024 699 SUPERFAMILY Protein kinase-like (PK-like) 427 673 IPR011009 -
Stsc120880g00024 699 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120880g00024 Stsc-Chr120880 153058 157889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120880g00024 9 690 MAP Kinase Kinase Kinase AT3G06620 51.376 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc120880g00024 PK_Tyr_Ser-Thr 1.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120880g00024 - - pvu:PHAVU_003G114400g 899.042