Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120880g00018 ATGGCGTTCTGGTGGTCGTTGCTTGTTCTCGGACTTGCTTTCGCCATCGGCAAGTTCCTCCTCTGGCTCATTCCTCCTAAGGTTCCTTCCATTGATGTTGACGCTTCCGATGTGTTGGACGATGGAAATCAAGCGCAGGAGAACAGCTACATATATGTACCTCCAAGGGGAGCGGCACAGCAATCTGGCACTAAAGTTCAGTGCTATGAGCCTGCTACCATGAAGTATTTGGGATATGTTCCTGCATTGACCCCGGATGAGGTCAGGGAGCAAGTGGAAAAAGTGCGGAAAGCCCAAAAAATGTGGGCAAAGACCAGCTTCAAGCAAAGACGCCAGTTCTTGCGTATACTTTTGAAGTATATAATAAAACATCAAGCACTTATATGCGAAATATCTTCGCGCGATACTGGAAAGACAATGGTGGATGCCTCTTTGGGAGAAATAATGACAACATGTGAGAAGATCCATTGGCTACTGTCAGAGGGTGAGAAGTGGCTGAAACCTGAATACAGATCCAGTGGAAGATCAATGCTTCATAAAAGTGCTAGAGTAGAATTTCACCCACTTGGTGTTATTGGTGCCATTGTGTCATGGAACTATCCTTTCCACAATATTTTCAACCCTATGTTGGCAGCACTTTTTTCTGGAAATGGCATTGTGATTAAGATATCAGAAAACGCAAGTTGGTCTGGATGCTTTTACTTCCGAATCATTCAATCAGCCCTTGCTGCCATAGGTGCTCCCGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCACTGGTGTCTTCTGCTGATAAAGTCATTTTTGTTGGATCACCTGGTGTTGGCAAGATGATAATGAGAGGTGCTTCTGAAACACTTATACCTGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATGTGGACCACGTTGCTCAAATTGCTGCCAGGGCTGTTCTTCAATCAAGTGGGCAGAACTGTGCTGGAGCTGAACGTTTTTATGTCCACAGGAGCATATATTCATCTTTTGTCAGTAAAGTTACCCAAATCATAAAATCTGTTACAGCTGGTCCACCACTTGCTGGAAAGTATGACATGGGAGCTCTATGCATGCATGAGCATTCTGAAAAACTTGAAGGCCTTGTCACTGATGCTATAGATAAAGGTGCAGAAATTGCTGCAAGAGGAAGTTTTGGGCCCATTGGTGGAGATGCAGTTGATCAGTATTACCCCCCAACTGTGATTGTTAATGTGAATCACTCCATGAGATTGATGCAAGAAGAGGCATTTGGACCAATCATGCCAATAATGAAATTCAGCTCTGATGAAGAGGTTGTCAAGCTTGCAAATGACTCAAGATATGGGCTTGGCTGTGCTGTTTTCTCAGGCAGTCAGAGCCGTGCCAGAGACATAGCTTCACAGATACATTGCGGCTTTGCCGCCATTAATGATTTTGCAGTAACATATATGTGTCAGTCCCTCCCATTTGGGGGCGTCAAACACAGTGGATTTGGACGATTTGGTGGTGCAGAAGGTTTGCGAGCATGCTGCCTTGTAAAAGCTGTTGTTGAAGATAGATGGTGGCCATACATTAAAACCATGATACCTAAGCCTATTCAGTATCCTGTAGCAGGAAACGCCTTCGAATTTCAGGAGTCACTAGTTGAAGCACTATATGGTCTCAGCATATGGGACCGTTTGAAAGCATTGATAAGCGTTTTAAAAGTGCTTACTGAGCAGAACTCTACCAACAGCAGTAAAGTGAAATGA 1785 0.4415 MAFWWSLLVLGLAFAIGKFLLWLIPPKVPSIDVDASDVLDDGNQAQENSYIYVPPRGAAQQSGTKVQCYEPATMKYLGYVPALTPDEVREQVEKVRKAQKMWAKTSFKQRRQFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKIHWLLSEGEKWLKPEYRSSGRSMLHKSARVEFHPLGVIGAIVSWNYPFHNIFNPMLAALFSGNGIVIKISENASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSADKVIFVGSPGVGKMIMRGASETLIPVTLELGGKDAFIVCEDVDVDHVAQIAARAVLQSSGQNCAGAERFYVHRSIYSSFVSKVTQIIKSVTAGPPLAGKYDMGALCMHEHSEKLEGLVTDAIDKGAEIAARGSFGPIGGDAVDQYYPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEVVKLANDSRYGLGCAVFSGSQSRARDIASQIHCGFAAINDFAVTYMCQSLPFGGVKHSGFGRFGGAEGLRACCLVKAVVEDRWWPYIKTMIPKPIQYPVAGNAFEFQESLVEALYGLSIWDRLKALISVLKVLTEQNSTNSSKVK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120880g00018 594 FunFam Aldehyde dehydrogenase A 301 495 - -
Stsc120880g00018 594 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Stsc120880g00018 594 FunFam aldehyde dehydrogenase 22A1 65 320 - -
Stsc120880g00018 594 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491
Stsc120880g00018 594 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491
Stsc120880g00018 594 SUPERFAMILY ALDH-like 60 532 IPR016161 GO:0016491
Stsc120880g00018 594 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Stsc120880g00018 594 CDD ALDH_F15-22 69 531 - -
Stsc120880g00018 594 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 59 527 - -
Stsc120880g00018 594 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120880g00018 Stsc-Chr120880 87999 94519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120880g00018 1 594 Aldehyde Dehydrogenase Gene Family AT3G66658 78.283 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120880g00018 - - gmx:100816920 1079.7