Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120880g00014 ATGGGAATTGACCCTTTTGGGTCTAGTTTTGAATTCTTTCCTTCACATGGAGGATACCCTCCATACACTAATCAGCAAAAGGATTATCTACAGTTTGATATGGTTTCTCCACCACCACAAATCCATACATACCTTGATGACCTTCACATGTTTGATGAAATTCCAACAAGAATGGTTTCACTAAGTGAAGAATCTGTCGCAAAGGGGAAGCAGCAAAGCTCGTCAGCTCCTTTAGCATCACTTGAGTTATTGAAAAGCTATGGCAGCAACAAAGGACTTAAGAAGTCATGTGATGAAGAGAAAATCATGCAACCAATTGATCATTCTGCTGCAGGTGATGAAGTTCTTGGGAAAAAGCTTTCAACTGAAGATGTGATCAGGATAGCAGGAACAAGGTTCATTCAATCTTCATCATCACAAAAATCTTTAGGATCATCAGCTTTGAAGTCCATTTTTAGCCACCCTTTTGGCCAATTTTTCTCAGGACTCTCTGATGAGGAGAAAGAAGAGATTCAACTTGCTGAATCCCTCTTGGCTTGTGCTGAGAAAGTTGGGTTTAAGCAGTTCGAGCGCACCGGCAAGTTGCTTTGTCAATGCGAGTCCTTATCTTCCAAGACCGGTTCACCAGTTAAGCGTATTGTTCATTACTTCGCGGAGGCTCTTCGCCTCAGGATTGATATTGGAACGGGAAGAATTTCACCCAAGGACTTGAAAGAGATGCAACCAATCGATGCTAGAGAGACAACCAAGAGTCTTACCCCCTCTGTTTTGGCTTTTTATGAAGCAGCTCCTTTCTGTCAGGTCACAACGTTCACTCTAGTCCAATCTGTATTAGAAAATGTTACTGAGGCAAAGAAGATTCACATCATTGATTTTGAAATCAGAAAGGGTGTTCAATGTTCAACCCTGATGCAATCCCTTGTGTTAAGAAATCAAAGTCCTTTAGAGCTGCTTAAGATAACAGCTGTTGGAAGTGGAAGCAATTCCAAGCATATCATAGAGGACACTGGTAAGAGATTGAAGGATTTTGCGATGAGCTTGAACTTAAACTTTTGCTATGATCTTGTTATTGTCCCTGACATGCAGCAACTCAAAGCAGATCTATTTAAGATAGATCCTGAAGAAACAATTGTAGTTTACTCTCAGTATGCACTTGGCCACATGATTCAGCAACCGGATCAGATTGAAACTATCATGAAAGTTCTCAAAACAATAAGGCCTAGTTTACTCGTCATGACTGAAATCGAGGCGAACCACAATTCGACATCATTTGTGAACCGGTTCATCGAAGCGCTATTCTACTTCGGTGCATTCTTTGATTGTCTAGAAAATTGCATGAAGCATGACGAGCCGAACCGATCGGTTTTCGAGTCTCAGTACCTTGCTTATGGAATCAAGAACATGTTGGCTGCAGAGGGAGAAGAGAGGAAGGCTAGAAATGTGAGGTTTGATGTGTGGAGGGCATTTTTCTCCAGGTTTGGATTGGTGGAGACAGAGATTAGCATGTTAGCTTTGTTCCAAGCTGAACTTGTTGCTAAAAGGTTCCCTTGTGGAAGCAGTTGTACATTTGAAAGGGATGGGAATTCCCTTCTTTTGGGGTGGAAGGGAACACCATTGAACTCTATTTCTGTTTGGAAGTTCCAATGA 1647 0.4165 MGIDPFGSSFEFFPSHGGYPPYTNQQKDYLQFDMVSPPPQIHTYLDDLHMFDEIPTRMVSLSEESVAKGKQQSSSAPLASLELLKSYGSNKGLKKSCDEEKIMQPIDHSAAGDEVLGKKLSTEDVIRIAGTRFIQSSSSQKSLGSSALKSIFSHPFGQFFSGLSDEEKEEIQLAESLLACAEKVGFKQFERTGKLLCQCESLSSKTGSPVKRIVHYFAEALRLRIDIGTGRISPKDLKEMQPIDARETTKSLTPSVLAFYEAAPFCQVTTFTLVQSVLENVTEAKKIHIIDFEIRKGVQCSTLMQSLVLRNQSPLELLKITAVGSGSNSKHIIEDTGKRLKDFAMSLNLNFCYDLVIVPDMQQLKADLFKIDPEETIVVYSQYALGHMIQQPDQIETIMKVLKTIRPSLLVMTEIEANHNSTSFVNRFIEALFYFGAFFDCLENCMKHDEPNRSVFESQYLAYGIKNMLAAEGEERKARNVRFDVWRAFFSRFGLVETEISMLALFQAELVAKRFPCGSSCTFERDGNSLLLGWKGTPLNSISVWKFQ 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120880g00014 548 ProSiteProfiles GRAS family profile. 164 546 IPR005202 -
Stsc120880g00014 548 Coils Coil 164 184 - -
Stsc120880g00014 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 539 IPR005202 -
Stsc120880g00014 548 Pfam GRAS domain family 174 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120880g00014 Stsc-Chr120880 76973 81402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120880g00014 165 548 GRAS Transcription Factor Family AT1G66350 30.130 2.06e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc120880g00014 GRAS 2.6e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120880g00014 - - gmx:100798926 614.764