Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120879g00017 ATGTCACAAGATTCTTGTTTGGAGGCAAATACAACGGTTGAGCAGTGGAAATGGACCGAAATGCAAGGCCTTGAGCTTCTTCCTGATGCTCCCATTTCACACCAATATATTAATAATAAACCCAACAACACTAAACTTCTCACAAACCAAATGGAAACTACTGCTTCTACTACTTCTGTTTCTGAACCCAACAAAGATGATGATGCTCCTTCTTCTGTTACTTCTTCTTCTGGCAATGGTAGTGTTGACAACAACAGCAACAAGCCTGAGACTCTTCCCTCTGTTGGGTTCAGGGAGCTTTTCAGATTTGCTGATGGGTTGGATTATGTTCTCATGTCCATTGGAACTGTTGGAGCAATTGTACACGGTTGTTCCTTGCCACTCTTCCTTCGCTTCTTTGCTGATCTTGTCAACTCTTTTGGTTCCAATGCCAACAACTTGGACAAGATGACTCAGGAAGTAGTCAAGTATGCATTTTACTTTCTGGTAGTGGGTGCTGCTATATGGGCATCTTCATGGGCTGAGATATCCTGTTGGATGTGGAGTGGGGAGAGGCAATCAACAAGGATGAGGATCAAGTACCTTGAAGCTGCTCTCAGCCAAGACATTCAGTTCTTCGACACCGATGTTCGAACCTCCGATGTTGTCTTTGCCATCAGCACTGATGCTGTCATGGTCCAAGATGCCATCAGTGAGAAGTTGGGAAACTTCATTCATTACATGGCAACATTTGTGTCTGGTTTTGTTGTTGGTTTCACTGCAGTCTGGCAATTGGCACTCGTCACCCTTGCCGTTGTCCCTATGATCGCGGTCATCGGCGCTATTCACACCACCACATTGGCCAAGCTCTCTGGCAAAACCCAGGAAGCTCTTTCTGAAGCTGGCAACATTGTAGAACAGACAGTTGTGCAAATTCGGGTGGTGCTGGCCTTTGTCGGGGAGTCTCGAGCATCGCAGGCATACTCTTCGGCGCTGAAGGTTGCCCAGAAGCTTGGCTACAAAGCTGGGTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGTTGTTATGCACTTCTTCTATGGTATGGAGGCTATCTGGTTAGGCACCACGCCACCAATGGAGGGCTTGCCATCGCTACCATGTTTGCTGTTATGATCGGTGGAATAGGTCTAGGCCAGTCTGCACCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGCATAATTGATCACAAACCCAGTATAGATAAGAACAGTGAAGCTGGTTTGGAGCTTGAGACTGTAACTGGACTCGTAGAGCTAAAAAATGTTAACTTTTCATACCCTTCAAGGCCAGATGTTCCGATCCTCAACGATTTCTCGTTGAGTGTGCCTGCTGGCAAGACCATAGCCTTGGTAGGTAGCAGTGGCTCTGGCAAGAGCACTGTGGTTTCTCTCATTGAAAGATTCTATGACCCAACTTCAGGACAAGTTTTGCTGGATGGCCATGACATTAAAACATTGAAGCTTAGATGGTTGAGGCAGCAGATAGGGCTAGTTAGCCAAGAGCCTGCATTGTTTGCTACCACTATAAGAGAAAATATACTACTGGGAAGGCCTGATGCCGACCAGGTTGAGATCGAAGAAGCGGCGAGGGTAGCTAATGCTCATTCCTTCATCATCAAGCTTTCTGAAGGTTATGAAACCCAGGTAGGAGAGAGAGGCATGCAACTCTCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCTATGCTGAAAAACCCAGCAATTCTCCTCCTAGATGAGGCAACAAGTGCATTGGATTCTGAATCAGAGAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGAGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCCCATGAAACTGCCATGAACAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCACCATACTCTCGCAGGCTGTCTGATTTCTCCACTTCAGATTTTAGCCTGTCCCTTGATGCATCACATCCAAATTACAGGCTCGAAAAGCTTCCCTTCAAAGAGCAAGCGACTGCACTTATCTTCAACACATTGCAACACTCCTTCTGGGATATTGTTGGTGAAAATCTGACGAAACGAGTGAGGGAGAAAATGCTGACAGCAGTGCTCAAGAATGAAATGGCATGGTTTGATCAGGAGGAAAACGAGAGTGCCCGGATAGCTGCTAGGCTTGCTCTTGATGCCAACAATGTTAGATCAGCCATTGGAGATCGAATTTCAGTGATTGTGCAGAACACTGCACTCATGCTAGTTGCTTGTACTGCAGGGTTCGTGCTGCAATGGCGCCTTGCCCTTGTCCTCATTGCTGTCTTCCCTCTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGATCTGGAAGCTTCTCATGCCAAGGCCACACAGTTGGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAGCCAAGATTGTTGGCCTTTTCACTTCTAACCTCGAAGCTCCACTACAACGGTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCACAGTTTGCTCTTTATGCTTCCTATGCACTTGGTCTCTGGTATGCATCCTGGCTTGTGAAGCACGGAATCTCTGATTTCTCCAAAACCATCCGAGTTTTCATGGTCCTTATGGTCTCTGCTAATGGTGCTGCCGAAACTTTGACATTGGCTCCTGAATTCGTCAAGGGAGGCCGAGCTATGAAGTCAGTCTTTGATCTCCTTGACCGTAGAACCGAAATTGAGCCGGATGATCCAGATGCCACACCTGTTCCTGATCGTCTTCGGGGTGAAGTTGAGCTTAAGCATGTGGACTTCTCTTACCCCACGCGCCCCGATATGCCTGTGTTTCGCGACCTCAGCCTTCGTGCGAGGGCTGGTAAAACTCTTGCACTTGTAGGGCCTAGTGGCTGTGGTAAAAGCTCAGTCCTTGCACTTATACAGAGGTTCTATGATCCATCATCTGGTAGGGTCATGATTGATGGAAAAGACATCAGAAGATACAATCTCAAGTCTCTAAGAAGACACATTGCTGTGGCCGAGCTTATGCTTCTCGACGAGGCAACAAGCGCGCTGGATGCTGAATCCGAGAGGTCGGTTCAGGAGGCTCTAGACCGTGCCTGCGCGGGGAAAACAACCATCATTGTTGCACACAGGCTATCAACCATCAGGAATGCCAATCTGATTGCTGTGATTGATGATGGCAAAGTAGCAGAACAAGGCTCCCATTCACAGCTGTTGAAGAATAATCAAGATGGGATCTATGCGCGCATGATTCAACTACAAAGGTTCACACACAGTCAAGTCATTGAGATGGCATCAGGTTCAAGTTCTTCAACAAGGCCAAAGAATGTGGAAAGAGAAGGTTAG 3519 0.4703 MSQDSCLEANTTVEQWKWTEMQGLELLPDAPISHQYINNKPNNTKLLTNQMETTASTTSVSEPNKDDDAPSSVTSSSGNGSVDNNSNKPETLPSVGFRELFRFADGLDYVLMSIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTRMRIKYLEAALSQDIQFFDTDVRTSDVVFAISTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSGKTQEALSEAGNIVEQTVVQIRVVLAFVGESRASQAYSSALKVAQKLGYKAGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDKNSEAGLELETVTGLVELKNVNFSYPSRPDVPILNDFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLSEGYETQVGERGMQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLPFKEQATALIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPLVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEAKIVGLFTSNLEAPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPEFVKGGRAMKSVFDLLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVLALIQRFYDPSSGRVMIDGKDIRRYNLKSLRRHIAVAELMLLDEATSALDAESERSVQEALDRACAGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNNQDGIYARMIQLQRFTHSQVIEMASGSSSSTRPKNVEREG 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120879g00017 1172 Gene3D - 458 632 IPR027417 -
Stsc120879g00017 1172 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 436 693 IPR003439 GO:0005524
Stsc120879g00017 1172 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 964 - -
Stsc120879g00017 1172 MobiDBLite consensus disorder prediction 643 666 - -
Stsc120879g00017 1172 MobiDBLite consensus disorder prediction 52 90 - -
Stsc120879g00017 1172 Pfam ABC transporter transmembrane region 113 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120879g00017 1172 Pfam ABC transporter transmembrane region 712 929 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120879g00017 1172 CDD ABC_6TM_Pgp_ABCB1_D1_like 112 409 - -
Stsc120879g00017 1172 Gene3D - 1064 1147 IPR027417 -
Stsc120879g00017 1172 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 401 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120879g00017 1172 ProSitePatterns ABC transporters family signature. 575 589 IPR017871 GO:0005524|GO:0016887
Stsc120879g00017 1172 Pfam ABC transporter 454 603 IPR003439 GO:0005524
Stsc120879g00017 1172 SMART AAA_5 463 746 IPR003593 GO:0016887
Stsc120879g00017 1172 SMART AAA_5 1009 1125 IPR003593 GO:0016887
Stsc120879g00017 1172 FunFam ABC transporter B family member 20 426 644 - -
Stsc120879g00017 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 973 1145 IPR027417 -
Stsc120879g00017 1172 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 982 1142 IPR003439 GO:0005524
Stsc120879g00017 1172 SUPERFAMILY ABC transporter transmembrane region 712 969 IPR036640 GO:0005524|GO:0016020
Stsc120879g00017 1172 FunFam ABC transporter B family member 1 99 434 - -
Stsc120879g00017 1172 FunFam ABC transporter B family member 19 948 970 - -
Stsc120879g00017 1172 Pfam ABC transporter 1001 1090 IPR003439 GO:0005524
Stsc120879g00017 1172 Gene3D - 973 1063 IPR027417 -
Stsc120879g00017 1172 FunFam ABC transporter B family member 1 709 947 - -
Stsc120879g00017 1172 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 710 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120879g00017 1172 PANTHER ABC TRANSPORTER B FAMILY 78 624 IPR039421 -
Stsc120879g00017 1172 CDD ABC_MTABC3_MDL1_MDL2 436 623 - -
Stsc120879g00017 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 623 IPR027417 -
Stsc120879g00017 1172 SUPERFAMILY ABC transporter transmembrane region 93 420 IPR036640 GO:0005524|GO:0016020
Stsc120879g00017 1172 Gene3D ABC transporter type 1, transmembrane domain 709 969 IPR036640 GO:0005524|GO:0016020
Stsc120879g00017 1172 Gene3D ABC transporter type 1, transmembrane domain 91 453 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120879g00017 Stsc-Chr120879 138438 143414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120879g00017 82 729 Calmodulin-binding Proteins AT2G36910 79.772 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120879g00017 K05658 - gmx:100814667 1114.75