Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120879g00007 ATGGCCAACCAACCTGAATCATCTGATCCCAAGGGAACAAAGAGGGATTTCAGCACTGCGATTCTCGAGCGGAAGAAGGCGCCGAATCGGCTTGTTGTTGATGAGGCCGTCAACGATGACAACTCCGTCGTCGCGCTTCACCCGGACACCATGGAGAAGCTCCAGCTCTTCCGCGGTGACACCATCTTGATCAAGGGAAAGAAAAGGAAAGATACAATCTGTATTGCACTTGCTGATGACACATGTGAGGAACCAAAAATAAGGATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTTGGTGATGTTGTCTCTGTGCATCAATGTGCTGATGTCAAATATGGAAAAAGAGTCCACATTCTCCCTGTGGATGATACTGTTGAAGGAGTAACAGGGAATCTCTTCGATGCATACTTAAAACCTTACTTCCTGGAGGCATATCGTCCAGTGAGGAAGGGTGACCTCTTTCTTGTGAGAGGAGGGATGAGAAGTGTTGAGTTCAAGGTTATTNNNNNNNNNNAGTACTGTGTTGTTGCCCCAGACACAGAGATCTTCTGTGAAGGGGAACCTGTTAAGAGGGAAGATGAGAACAGATTAGATGAGGTTGGTTATGATGATGTTGGTGGCGTAAGAAAGCAGATGGCACAGATTCGGGAACTAGTGGAACTGCCACTGAGGCACCCACAATTGTTCAAGTCTATTGGTGTTAAGCCACCAAAAGGAATTCTGCTCTATGGACCTCCTGGGTCTGGCAAGACTTTGATTGCCAGAGCAGTTGCAAATGAGACCGGTGCTTTCTTTTTCTGCATCAATGGTCCTGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTAAGAAAGGCATTTGAGGAAGCAGAGAAGAATGCTCCTTCCATCATATTCATCGATGAGATAGATTCAATAGCTCCTAAGAGGGAGAAGACACATGGAGAAGTTGAGAGGAGGATTGTTTCCCAACTCTTGACTCTCATGGATGGCCTTAAATCTCGTGCACATGTAATTGTTATTGGAGCTACAAATCGCCCCAATAGCATTGATCCTGCTCTTAGGAGGTTTGGAAGATTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGTCGGGCGTCTTGAAGTACTTCGTATTCACACAAAGAATATGAAGCTTGCCGAAGACGTTGATTTGGAGAAGATTGCTAAGGACACCCATGGATATGTTGGTGCCGATCTTGCCGCTTTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAATCAATTGATGCTGAAATATTGAACTCTATGGCAGTAACAAATGAGCACTTCTCAACTGCTCTTGGCTCAAGCAATCCTTCTGCCCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGAGGATATTGGTGGTCTTGAAAACGTTAAGAGAGAACTCCAAGAGACCGTTCAATATCCAGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCACCTTCAAAGGGTGTTCTTTTCTATGGTCCCCCTGGTTGTGGTAAAACCCTTTTGGCAAAGGCAATTGCTAATGAATGTCAGGCAAACTTCATTAGTGTTAAGGGTCCAGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCTTGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGAGAGGTAGCAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGGGTTTTGAATCAACTACTTACCGAGATGGATGGAATGTCAGCAAAGAAAACTGTGTTTATCATTGGGGCCACCAATCGACCAGACATCATAGACCCTGCTCTTCTACGTCCTGGCCGTCTAGATCAGTTGATTTATATCCCTCTACCAGATGAGGACTCACGTCATCAGATATTCAAAGCTTGCTTGAGAAAATCCCCAATTTCCAAAGATGTTGACCTTAGAGCTCTTGCGAAATATACTCAAGGTTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAATATTGAGAAGGACATTGAGAGAGAAAGGAGGAGGAGGGACAACCCAGAGGCAATGGAAGAGGATGTTGAAGATGAAGTAGCAGAAATCAAGGCAGCTCATTTTGAGGAATCTATGAAGTATGCACGAAGGAGTGTTAGCGATGCTGACATTCGCAAGTACCAGGCATTTGCCCAAACATTGCAGCAGTCAAGAGGGTTTGGAACTGAGTTTAGGTTTGCAGATACTACTTCTGGTGGTACCGCAGCTGCATCTGATCCGTTCGCATCTGCTGGGGGAGCTGATGAAGATGATCTTTACAGTTAA 2415 0.4493 MANQPESSDPKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIXXXXYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADTTSGGTAAASDPFASAGGADEDDLYS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120879g00007 804 Gene3D - 466 649 IPR027417 -
Stsc120879g00007 804 NCBIfam CDC48 family AAA ATPase 31 765 IPR005938 GO:0016787
Stsc120879g00007 804 SMART AAA_5 512 651 IPR003593 GO:0016887
Stsc120879g00007 804 SMART AAA_5 239 375 IPR003593 GO:0016887
Stsc120879g00007 804 Gene3D - 374 465 - -
Stsc120879g00007 804 PANTHER AAA-FAMILY ATPASE 442 767 - -
Stsc120879g00007 804 CDD RecA-like_CDC48_r1-like 207 372 - -
Stsc120879g00007 804 ProSitePatterns AAA-protein family signature. 619 637 IPR003960 GO:0005524|GO:0016887
Stsc120879g00007 804 Pfam AAA+ lid domain 671 711 IPR041569 -
Stsc120879g00007 804 Pfam AAA+ lid domain 395 437 IPR041569 -
Stsc120879g00007 804 SMART CDC48_N_2 30 113 IPR003338 -
Stsc120879g00007 804 Gene3D - 113 207 - -
Stsc120879g00007 804 SUPERFAMILY Cdc48 domain 2-like 112 202 IPR029067 -
Stsc120879g00007 804 SMART CDC48_2_2 130 194 IPR004201 -
Stsc120879g00007 804 ProSitePatterns AAA-protein family signature. 343 361 IPR003960 GO:0005524|GO:0016887
Stsc120879g00007 804 Gene3D - 208 372 IPR027417 -
Stsc120879g00007 804 MobiDBLite consensus disorder prediction 779 804 - -
Stsc120879g00007 804 FunFam Transitional endoplasmic reticulum ATPase 204 372 - -
Stsc120879g00007 804 FunFam Cell division control 48 113 207 - -
Stsc120879g00007 804 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Stsc120879g00007 804 Gene3D - 653 761 - -
Stsc120879g00007 804 Gene3D - 8 112 - -
Stsc120879g00007 804 FunFam Cell division control 48 374 465 - -
Stsc120879g00007 804 Pfam ATPase family associated with various cellular activities (AAA) 243 372 IPR003959 GO:0005524|GO:0016887
Stsc120879g00007 804 Pfam ATPase family associated with various cellular activities (AAA) 516 649 IPR003959 GO:0005524|GO:0016887
Stsc120879g00007 804 FunFam Transitional endoplasmic reticulum ATPase 466 649 - -
Stsc120879g00007 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 762 IPR027417 -
Stsc120879g00007 804 SUPERFAMILY ADC-like 27 110 IPR009010 -
Stsc120879g00007 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 464 IPR027417 -
Stsc120879g00007 804 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Stsc120879g00007 804 CDD RecA-like_CDC48_r2-like 487 647 - -
Stsc120879g00007 804 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120879g00007 Stsc-Chr120879 64603 69006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120879g00007 445 775 Calmodulin-binding Proteins AT3G56690 43.202 2.31e-80 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120879g00007 K13525 - gmx:100791603 1508.43