Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120879g00003 ATGGTGTGCTTTCCATTCCACTATGGTGGAGAGAAGAAGGATGAACCAAAAGGCGTGAAATCAATGTCAGGTGGATCAGACTGCTCTACTTATGTGGAGGCTGAGGTTAGAAGATCTGGTTCTGAGTTGAATTCTCAGGATGTCTCGGACAATGGCAGCTCGGATTCCCTCAGGAGGAATTCCACTCCTAGTTTGTCCCAAAGACCTAGCAACCTTAGAGTGTTCACGGTATCCGAACTCAAATCGGCCACAAAGAATTTCAGTCGCTCTGTTATGCTCGGAGAGGGTGGGTTTGGGTGCGTCTACTATGCGATGATCAAGAGTTTAGAGGATCCATCCAGAAAAATTCAAGTTGCTGTTAAACAACTTAGTAAAAGGGGAATGCAGGGGCATAGAGAATGGGTTACAGAAGTGAATGTTCTTGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGATACTGTGCCGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTACGAATACATGCCAAACAGAAGTGTGGAACACCATTTGTCTCATCGATCCGAGACTCCTCTCTCGTGGAGTAGGAGAATGAAAATAGCCCAAGATGCAGCTCGTGGTTTAACATACCTACACGAGGAAATGGATTTTCAGATCATTTTCAGAGATTTCAAATCATCGAATATCCTTCTTGATGAGAAATGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGATTGGGACCATCGGATGGACTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCCGAGTATGTTCAAACCGGACGTCTGACATCAAAAAACGATGTGTGGAGCTATGGCGTCTTCCTTTATGAACTGATTACTGGCAGGCGCCCTATCGACCGAAATCGCCCCAAGGGTGAGCAGAAGATGTTGGAATGGATAAGGCCATACCTAGCAGATACGAAGAAATTTCAACTAATATTAGATCCGAGACTTGACAAGAAGCAAGTCTTAAAGCCAGCCCAGAGACTCGCTCTAATAGCTAACAAATGCCTGGTCAGAAACCCAAAGAATCGCCCGAAAATGAGCGAGGTGTTGCAAATGGTGAATGGTTTAGTAGAGTCCTCATCTGGTGCTAGTCCACAGGCACCCTTGAAGAGTGCGGCGAAGACAACCAAAGCTTCCAATGAGAGTGAAATACACAACAAGAAAAGGACCATGGATATGAAATCTGGTGAAAGCAATTGGTTTGTTAGGATCTTTAGACAAAAGCTGGTAAACTCATGTTGA 1287 0.4468 MVCFPFHYGGEKKDEPKGVKSMSGGSDCSTYVEAEVRRSGSELNSQDVSDNGSSDSLRRNSTPSLSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYYAMIKSLEDPSRKIQVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLSWSRRMKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEKWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPIDRNRPKGEQKMLEWIRPYLADTKKFQLILDPRLDKKQVLKPAQRLALIANKCLVRNPKNRPKMSEVLQMVNGLVESSSGASPQAPLKSAAKTTKASNESEIHNKKRTMDMKSGESNWFVRIFRQKLVNSC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120879g00003 428 MobiDBLite consensus disorder prediction 37 68 - -
Stsc120879g00003 428 Gene3D Transferase(Phosphotransferase) domain 1 173 394 - -
Stsc120879g00003 428 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Stsc120879g00003 428 MobiDBLite consensus disorder prediction 375 400 - -
Stsc120879g00003 428 SUPERFAMILY Protein kinase-like (PK-like) 61 368 IPR011009 -
Stsc120879g00003 428 FunFam Serine/threonine-protein kinase PCRK2 173 382 - -
Stsc120879g00003 428 Pfam Protein kinase domain 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120879g00003 428 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120879g00003 428 ProSitePatterns Protein kinases ATP-binding region signature. 93 121 IPR017441 GO:0005524
Stsc120879g00003 428 MobiDBLite consensus disorder prediction 375 394 - -
Stsc120879g00003 428 CDD STKc_IRAK 93 371 - -
Stsc120879g00003 428 MobiDBLite consensus disorder prediction 39 68 - -
Stsc120879g00003 428 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
Stsc120879g00003 428 PANTHER OS01G0588500 PROTEIN-RELATED 56 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120879g00003 Stsc-Chr120879 15621 19517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120879g00003 1 398 Glycoside Hydrolase AT3G07070 39.320 5.91e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120879g00003 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120879g00003 - - gsj:114400704 733.406