Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120879g00002 ATGGAATTGAATTATGGAATGAGGAAGAAGAAGAAGAACATTATTAACAATGGCTGCTTCTTCCTCGTTTTACTTCTACTCTCGTGTTTTCTACCACCACCGCACCGTGTTCAATGTGCGGACCCGACGCCACCGGTGCCACAATTTTACACGGAAGAAATCTACAAGGAGATTGAAGGTCTCACCTCAGCTTTAACCAGAGATATCAAGACATCCCTAGATTTCTGCATTAAGGATCCGAAAAAAGATTGGGAGGAAGCGTTTAATTTCAAGGGCAAGTTAGATTTCGTCGATGGGTGTGTTAAGCAAAAAGGGGATTTCAGGAATCGGATGTGTACAACAGCTGAAATAAGGTACTACTTCAGGAATTTATTCCAAGGGGGTTCATCAGATGGGAATTATGTGAAACCAAACAGGAATTGCAACTTGACTTCATGGGTTCCTGGTTGTGAACCTGGTTGGAGTTGTAGTGCTGATGAGCCTATTGATCTCAAGAAGGATAACAAGGATGACATTCCTTTAAGGGTTTCAAATTCCCAGCCTTGTTGTGAGGGCTTCTTCTGTCCCGAGGGCTTGACTTGCATGATAACTTGCCCTCTTGGTTCTTACTGTCCACTCTCAACACTAGATGCAGCAAATGGAGTATGTAACCCATATGGTTACAAGATACCTGCAGGAGACAAGAATCATACCTGTGGTAGTGCTGATAGTTGGAGCAGTGCTGTCAACAATACTAACATATTCTGTGAAGCAGGACATTACTGCCCAACAACAACCCAAAAGTCTATTTGCAATAAGGGATATTATTGCAGGGAGGGGTCAACTGATCCAATTGCATGCTCCAAGTTGAGTACCTGTGATCCAGCTTCTGAAAGCCAAACGATGCATGCTTATAGTGCTTTGCTTATTGTGGCTTTGAGTACACTCCTAGTCTTCATTTATAACTGTTCTGATCAAGTTCTTGCCACTCGAGAAAGAAGGCAAGCGAAATCCAGAGAACGTGCAGCAAAGCATGTTAGAGAAACGGTGCAAGCACGTGAAAGGTGGAAGATGGCAAAAGATATTGCCAAGAAGCGAACAATGGAGTCTTTGACACGAACCTTCTCGCGAAAGAAGTCACAGAAGATGCAGGATCTTCCAAATACCATGGCAAATGTGGCCAGCAAGAAGGAACCTAGCAACCTCTCCAAGATGATGGATTCCATTGAGAATGATCCCAACAGTCACGAAGGATTCGACGTGCAGATTGGAGATAAGAATGTCAAAAAGCAGCAGCTGGGGCCAAAGGGAAAGAATCTGCATACACATAGCCAGATTTTGAGGTATGCTTATGGCCAGATTGAGAAGGAGAAAGCTCAGCAAGAGAAGAACTCTAACTTGACATTCTCAGGAGTGATCTCGATGGCCAGCGAGCAAGGAGTGGAAGTGAGAAAAAGGCCTGTGATTGAGATAGCTTTCAAGGACATAACTCTCACTTTGAAAGGGAAGAACAAGCATCTCCTGAGGTGTGTGCATGGCAAGTTCATGCCAGGTCGAATTTCAGCTGTGATGGGACCCTCAGGGGCTGGCAAAACCACATTCCTTTCAGCTTTGGTAGGAAAAGCAAGAGGGTGCACTGTAACAGGTGAAATTCTGATTAATGGAAAAAATGACTCCATTCACTGTTATAAGAAAATCACAGGTTTTGTGCCACAAGATGATATTGTCCATGGAAACTTGACAGTGGAGGAAAATCTTCGTTTTAGTGCAAGATGCAGACTATCTGCGGACTTGCCAAAAGCAGATAAGGTTTTGATTGTTGAGAGGGTAATTGAGTGCTTGGGACTTCAGCCAGTGAGGGATTCTCTAGTTGGGACAGTAGAGAAGCGAGGCATATCTGGAGGGCAGAAAAAACGTGTAAATGTAGGCCTGGAGATGGTGATGGAGCCTTCCTTGTTAATCTTAGATGAGCCTACAACTGGCCTTGACAGTGCATCTTCCAGTTTGCTGCTTAAGGCTCTTCGACGCGAAGCTCTTGAAGGAGTTAACATTTGCATGGTGCTTCATCAACCAAGCTATACTTTGTTTAGAATGTTTGATGATATAGTGTTTCTAGCCAAAGGTGGTCTTACTGCATACCATGGTCCTGTGAAAAATGTAGAAGAATACTTTGCTGGTATTGGGATTCCTGTACCAGACCGTGTGAATCCTCCTGACCATTTCATTGACATTCTAGAGGGTTTGGTGAAACCGAGTGCTCCGGGTGTAACTCACGAACAACTTCCTGTCAGATGGATGCTTCACAATGGATATGCAGTGCCACCAGATATGCTTCATTTTGTTGATCAAATCGCAGCTGCTTCTGGTGGCGCACCTGTGATTCCTGCAAGTCAGTCAATAAAGGTTTCTGAGCATGAGCAATCGTTTTTCTCTGAGTTTTGGGAGGATTTGAAGGATAATATTCAGAGCCAACTAGATCGCATGGAGGCAATCTTCATGAAGTCGAAGGACTTATCAAACCGGAGAACTCCTAATATAATCAGGCAGTACAGATATTTTATCGGCCGGGTCGGTAAGCAGCGGTTGAGAGAGGCTAAATTACAAGCTGTAGACTATCTTCTTTTACTAGTTGCTGGTGCTATCTTGGGAATGCTCACTAAAGTGAATGATAACACATTTGGAGCCCTTGGTTATACATTTACAATCATTGCTGTCTCTCTACTTTGCAAGATTGGTGCCCTGAGATCATTTTCTAATGATAAGTTAACATACTGGAGGGAGAGTGCAGCTGGGATCAGCAGTCTGGCTCATTTTCTATCTAAAGACACAGTTGATCTTTTCAACACAATCATCAAACCTCTTGTTTTTCTATCCATGTTCTACTTTTTCAGCAATCCGAGGTCAAGCTTTGAAAGTAATTATGTAGTGTTGCTTTGTTTGGTGTACTGTGTGACTGGCATAGCATATATATTCACCATCCACTTCGCCTACGGTCTTGCGCAGCTGTGGTCAGTGCTGCTCCCTGTGGTTATGACCCTCATTGCAAAACAAAAGGATGATACAATACTCATGCACATCATAATGAAAGTTTGCTACCCAAAATGGGCTTTGGAGGCCTTTGTCATTGCAAATGCTGAAAGGTACACTGGGGTTTGGTTGATAACACGTTGCGGTTCACTGATGGCGAGTGGGTATAATCTTGGAGACTGGTCCTTTTGTCTGATTGCCCTTGTTGCTTATGGCATTCTTGCCAGAATTGTGGCCTTCTTTTGTCTTGTTCTTTCCCAAAAGAGGTGA 3276 0.4362 MELNYGMRKKKKNIINNGCFFLVLLLLSCFLPPPHRVQCADPTPPVPQFYTEEIYKEIEGLTSALTRDIKTSLDFCIKDPKKDWEEAFNFKGKLDFVDGCVKQKGDFRNRMCTTAEIRYYFRNLFQGGSSDGNYVKPNRNCNLTSWVPGCEPGWSCSADEPIDLKKDNKDDIPLRVSNSQPCCEGFFCPEGLTCMITCPLGSYCPLSTLDAANGVCNPYGYKIPAGDKNHTCGSADSWSSAVNNTNIFCEAGHYCPTTTQKSICNKGYYCREGSTDPIACSKLSTCDPASESQTMHAYSALLIVALSTLLVFIYNCSDQVLATRERRQAKSRERAAKHVRETVQARERWKMAKDIAKKRTMESLTRTFSRKKSQKMQDLPNTMANVASKKEPSNLSKMMDSIENDPNSHEGFDVQIGDKNVKKQQLGPKGKNLHTHSQILRYAYGQIEKEKAQQEKNSNLTFSGVISMASEQGVEVRKRPVIEIAFKDITLTLKGKNKHLLRCVHGKFMPGRISAVMGPSGAGKTTFLSALVGKARGCTVTGEILINGKNDSIHCYKKITGFVPQDDIVHGNLTVEENLRFSARCRLSADLPKADKVLIVERVIECLGLQPVRDSLVGTVEKRGISGGQKKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKNVEEYFAGIGIPVPDRVNPPDHFIDILEGLVKPSAPGVTHEQLPVRWMLHNGYAVPPDMLHFVDQIAAASGGAPVIPASQSIKVSEHEQSFFSEFWEDLKDNIQSQLDRMEAIFMKSKDLSNRRTPNIIRQYRYFIGRVGKQRLREAKLQAVDYLLLLVAGAILGMLTKVNDNTFGALGYTFTIIAVSLLCKIGALRSFSNDKLTYWRESAAGISSLAHFLSKDTVDLFNTIIKPLVFLSMFYFFSNPRSSFESNYVVLLCLVYCVTGIAYIFTIHFAYGLAQLWSVLLPVVMTLIAKQKDDTILMHIIMKVCYPKWALEAFVIANAERYTGVWLITRCGSLMASGYNLGDWSFCLIALVAYGILARIVAFFCLVLSQKR 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120879g00002 1091 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 253 1078 - -
Stsc120879g00002 1091 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524|GO:0016887
Stsc120879g00002 1091 SMART AAA_5 510 702 IPR003593 GO:0016887
Stsc120879g00002 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 707 IPR027417 -
Stsc120879g00002 1091 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 484 725 IPR003439 GO:0005524
Stsc120879g00002 1091 Pfam ABC-2 type transporter 682 1090 IPR043926 GO:0140359
Stsc120879g00002 1091 FunFam ABC transporter G family member 24 478 720 - -
Stsc120879g00002 1091 Gene3D - 482 718 IPR027417 -
Stsc120879g00002 1091 CDD ABCG_EPDR 482 708 - -
Stsc120879g00002 1091 Pfam ABC transporter 504 652 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120879g00002 Stsc-Chr120879 6503 12691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120879g00002 511 704 Calmodulin-binding Proteins AT2G36910 29.208 1.27e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120879g00002 - - lang:109333797 1644.4