LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120878g00019	ATGACAGTTGAGAGAAGGTTTGTTTTGGTTGGGATTAGAATAGATAGCCATAGCAGACATCTCCTCAACTGGGCACTTGTTAAAGTTGCTGAACCTGGGGATTGTGTTATTGCACTCCACATAGTAAAAAATCCAGATCATGTTTCCAAAAATAAGACTTTGATAGATGGATACTTAGATGTTTATGAAGGACTATGTGATGTGAAGAAGGTAGGACTCACTGGTCAAATCTTGACAGGAAGTTCAATCAGAGACATTCTTGTTAGAGAAGCAAAAAATCATGCTGCTGTAGCTCTTGTGGTAGGAGGTAGAGCTGCCACAGCTAAATATTGTGCCAAACGACTTCCAACCACTACCAATGTTCTAGCCATTCAGGATTCAAGAATTGTCTTCAAGAGGTGTACCAATAAAGAACTACCACTATCAGGTGGTTTGTTAGTGGATCCAAGGCCAAGCTTAAGCATAGAAAGCATGAGTGATAGAGTAGTTCAGTCAGAATTTGGTGACTCTGAGGTTGATATTGAGAAACCAAGCCATTGGAGTACCAGGGAATCTAAGGAAGAATCGTTAAGCGGATCAGGGAAGTTCAAGACAAGGTCAGTATCTATGTTTTCGGGTGATCCTGCTGAGCAGAAGCTTGGATGGCCTCTGCTCCTCAGAGCCAATTCAGAAATCTCACAAAACCTTCATGCAAGGGACATGTCGGTGGTGGAATGGGTGATGAAGTTTCCGGATCGTTCGCCCCATGAAAGTCCTCATTCTTCTTCCACCGAGGAGGGAAGCCGGTCCGAAAGGGGCATAAGTGATTTCGAGGATGAGAGCTCTAAAACTGGTTCACCTCTATCTTCTCAGCTACCAGAGGGAATAGAGCGGATGTTTAACCTCAATTCACTCAATTGCAAGTGGTTCAGCCTTGAGGTTCTGAAGTCTTGCACTAATCAATTTTCTTCAGAAAACTTGATTGGGAAAGGCGGGTGCAATCGTGTGTACAAAGGAACTCTCCCTGATGGAAAGCCAATCGCAGTTAAAGTTTTACAGTCATCAAAAGAAGCATGGAAGGAGTTTGCCCTTGAGGTGGAAATAATATCATCATTGGAACACAGAAACATCACCCCTCTGCTTGGAATTTGCATTGAGGACAGTGATTTAATCTCAGTTTATGATTATTTCCCTAAAGGCAGCTTAGAGGAAAATTTACATGGAAGGGACAAGGATGGTTCCATCTTGTCATGGGAATTAAGATTTAAAATAGCTCTTGGGATAGCTGAAGCCTTGGATTACCTACACAGGGAAACTCTGAAGCCTGTTATACATAGAGATGTCAAGTCCTCAAACATTCTTCTTTCCCATGAGTTTAAACCACAGTTATCTGATTTTGGGCTTGCAATATGGGGACCAACAACTACATCTTTTCTGACAGAAGAAGATGTTGTAGGAACATTTGGTTATCTTGCTCCTGAGTACTTCATGTATGGAAAAGTTAGTGACAAGATTGATGTTTATGCCTTCGGTATAGTGCTACTTGAACTCATATCAGGAAGGGAACCTATCAATCCTGAACCTTGCAAAGGACAGGAAAGCTTGGTGGTGTGGGCAAAACCAAAATTAGAGAGAGGGGATATAAAGGGCCTATTAGACCCAAGTTTAGAAGGTAAGTTTGATGAGGCCCAATTACAAAGAATGGTTCTGGCAGCATCTCTATGCATTACAAGGGCTGCAAGGCTTCGCCCTAAAATGAACCAGATTCTAAAGATCCTAAAAGGAGATGAGAAAGTTGAAAGTGTGTATAACCTGCAAGGTAATGATAATGATAAAGATAATGATGAACACTCAGAAAATCAAGAAAACATTGATGATGAAGTGTACCCTAGCTCAAGTGCAGAGTTACATCTTAGTCTTGCATTACTTGGAGTTGATCAGGATGACACTGCATCATCATATAGCAGTAGTGAACACCCAAAAGAACAGTGGAGCAGGTCATCAAGTTTTGATTAG	1995	0.416	MTVERRFVLVGIRIDSHSRHLLNWALVKVAEPGDCVIALHIVKNPDHVSKNKTLIDGYLDVYEGLCDVKKVGLTGQILTGSSIRDILVREAKNHAAVALVVGGRAATAKYCAKRLPTTTNVLAIQDSRIVFKRCTNKELPLSGGLLVDPRPSLSIESMSDRVVQSEFGDSEVDIEKPSHWSTRESKEESLSGSGKFKTRSVSMFSGDPAEQKLGWPLLLRANSEISQNLHARDMSVVEWVMKFPDRSPHESPHSSSTEEGSRSERGISDFEDESSKTGSPLSSQLPEGIERMFNLNSLNCKWFSLEVLKSCTNQFSSENLIGKGGCNRVYKGTLPDGKPIAVKVLQSSKEAWKEFALEVEIISSLEHRNITPLLGICIEDSDLISVYDYFPKGSLEENLHGRDKDGSILSWELRFKIALGIAEALDYLHRETLKPVIHRDVKSSNILLSHEFKPQLSDFGLAIWGPTTTSFLTEEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGIVLLELISGREPINPEPCKGQESLVVWAKPKLERGDIKGLLDPSLEGKFDEAQLQRMVLAASLCITRAARLRPKMNQILKILKGDEKVESVYNLQGNDNDKDNDEHSENQENIDDEVYPSSSAELHLSLALLGVDQDDTASSYSSSEHPKEQWSRSSSFD	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120878g00019	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	436	448	IPR008271	GO:0004672\|GO:0006468
	Stsc120878g00019	664	FunFam	Putative receptor-like serine/threonine-protein kinase	390	602	-	-
	Stsc120878g00019	664	SMART	serkin_6	315	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120878g00019	664	Gene3D	Phosphorylase Kinase; domain 1	280	389	-	-
	Stsc120878g00019	664	MobiDBLite	consensus disorder prediction	245	284	-	-
	Stsc120878g00019	664	Pfam	Protein kinase domain	316	518	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120878g00019	664	Gene3D	Transferase(Phosphotransferase) domain 1	390	604	-	-
	Stsc120878g00019	664	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	284	389	-	-
	Stsc120878g00019	664	MobiDBLite	consensus disorder prediction	245	272	-	-
	Stsc120878g00019	664	ProSiteProfiles	Protein kinase domain profile.	315	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120878g00019	664	SUPERFAMILY	Protein kinase-like (PK-like)	296	586	IPR011009	-
	Stsc120878g00019	664	MobiDBLite	consensus disorder prediction	166	198	-	-
	Stsc120878g00019	664	CDD	USP_Like	8	104	-	-
	Stsc120878g00019	664	MobiDBLite	consensus disorder prediction	642	664	-	-
	Stsc120878g00019	664	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	106	-	-
	Stsc120878g00019	664	MobiDBLite	consensus disorder prediction	598	623	-	-
	Stsc120878g00019	664	MobiDBLite	consensus disorder prediction	166	193	-	-
	Stsc120878g00019	664	PANTHER	OS08G0249100 PROTEIN	188	615	IPR046958	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120878g00019	Stsc-Chr120878	101865	105170	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120878g00019	303	597	Trihelix Transcription Factor Family	AT1G70460	43.333	1.06e-75	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Stsc120878g00019		Pkinase	1.5e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120878g00019	-		-	gmx:100789189	957.977