Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120878g00018 ATGGACGACGGTGAGCTTGATTTCTCGAACCAGGAAGTGTTCTCAAGTCCAAATATGGCTGAACTTCCAAGCAGTGGCTCAATGGATAGCTTCTTTGAGGAACTCCTCAAGGACAGCCATGCTTGCACCCATACCCACACCTGTAACCCCCCTGGTCCTGATTATTCCCATACTCATACCTGCTACCATGTTCATACCAAGATTGTGCCTGCCCCATCCGAGGAGCAAGTTGGAACTGACGACACTGCTGAGTCTGCTGAAAAGAAGTCAAAGAAGCGCCCCTTGGGTAACCGGGAAGCCGTACGCAAGTACCGCGAGAAGAAGAAGGCTCGGGCTGCTTCTCTGGAGGATGAGGTTGTCAAATTGAGAGCTTTGAACCAGCACTTGATGAGGAAGTTGCAAAGCCAGGCTGCTTTGGAGGCGGAAATCTCGAGGTTGAAATGCTTGCTAGTTGACATTAGGGGCAGGATTGAAGGAGAAATTGGGACGTTTCCATATCAAAAGCCAGCGGCTGCTGCTGTGAGCCCACCAGCACAGAACGTACCTGGTTCTTATGTGATGAACCCTTGTAACTTGCAGTGTGATGATCGGGTCTACTGCCTTCACCCGGGAGCAGATGGAAAAATTGCAGAAGGTGCATCACTGACTACTGAAGGACTTAATGGTTGTGAATTCGAGAGTCTTCAGTGCCTAGCAAACCAGAATCTGGCCCTTAAGGATCTACCTTCTTGTGGAGTAGGACAAACAGTGTCTAATGTGAATTCTTCTGCATCAAACAAAAGAAAAGGAGGGTCTCGTGCAATGACAGCTGGCTGA 816 0.4926 MDDGELDFSNQEVFSSPNMAELPSSGSMDSFFEELLKDSHACTHTHTCNPPGPDYSHTHTCYHVHTKIVPAPSEEQVGTDDTAESAEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVKLRALNQHLMRKLQSQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKPAAAAVSPPAQNVPGSYVMNPCNLQCDDRVYCLHPGADGKIAEGASLTTEGLNGCEFESLQCLANQNLALKDLPSCGVGQTVSNVNSSASNKRKGGSRAMTAG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120878g00018 271 MobiDBLite consensus disorder prediction 9 23 - -
Stsc120878g00018 271 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 153 IPR004827 GO:0003700|GO:0006355
Stsc120878g00018 271 MobiDBLite consensus disorder prediction 72 107 - -
Stsc120878g00018 271 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Stsc120878g00018 271 Coils Coil 98 132 - -
Stsc120878g00018 271 PANTHER CCAAT/ENHANCER BINDING PROTEIN 2 165 IPR031106 GO:0003700|GO:0006351
Stsc120878g00018 271 MobiDBLite consensus disorder prediction 252 271 - -
Stsc120878g00018 271 MobiDBLite consensus disorder prediction 1 23 - -
Stsc120878g00018 271 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Stsc120878g00018 271 Gene3D - 77 153 - -
Stsc120878g00018 271 CDD bZIP 91 144 - -
Stsc120878g00018 271 SUPERFAMILY Leucine zipper domain 89 136 IPR046347 GO:0003700|GO:0006355
Stsc120878g00018 271 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120878g00018 Stsc-Chr120878 96857 99655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120878g00018 1 270 bZIP Transcription Factor Family AT4G35040 65.568 1.02e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120878g00018 bZIP_2 3.4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120878g00018 K25785 - gmx:780549 437.573