Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120878g00007 ATGGAACTATGTCATTCCAAAAATCTCGTAAAGCTACCAGATTTATCTCAGGCCCCAAATCTTTTGTACCTAGATCTTGAAGGATGCGTTAAACTTGCTCATCTTGATCCATCCATTGGTTCACTAGAAAAGCTTTGTTTCTTGAATCTGGAAAACTGTGAAAATCTTGTTAGTATTCCCAACAGCATATTTGATCTTAATTCTCTTCATCATTTAAATCTATCTGGCTGTTCGAAATTAATTAAATATCAGTTGTTAGACAATCCGTGGCAAACAGAGCAGCTGAAAATGGTTGATACAAGTGAAAGTGTACAAAGCCACATGACATCCCCAGTGTGCCAAACTCTTACAAGGTCTATCCGTTTCTTCTATTCTAAAAGACGTGCAAACTTAGCTGATTCGTTGGTGTCTTCTTTGCCTCGTTTCCCAACTTTGGTAGTTCTTGACATAAGTTTCTGTAATCTACTACAAATCCCTGATGCAATTGGACAGTTACAATGTTTAGAAAGATTAAACATAGGGGGAAACAATTTTATTACACTTCCTCATTGTATTGAGGAACTTCCCAAGCTAAGGGAGTTGAACTTGGAGTATTGTATGCATCTAAAGTGGTTGCCAAGTACCCTTTTGCCCATGGGAAGAAGTAGCTATGGAGGATTATATGTTTTCAACTGCCCCAATTTGAGTAACACGGAAGGCTATCGTCTCACGGCTATTTCATGGTTGATAAAAGTGATTCAGCAGGTGAACATGCAATGCTCTTTCCCCGGATGCATCATTAAAGTTGTTATTCCGGGTAATAAAATTCCAAGGTGGTTCAACAAACAGAACACAGGCCGTTCAATGATGCTGGATCCATCTCCCATTCTGTTTGACAATAATTGGATTGGCATTGCTTACTGTGTAACATTTGTGGTACATGATGCTCCAACTCAATTCCTTGAACGAAGGAGAAAAGTGCTTGTAGGTTGTGGTTTCCATTTTAAACCGCATAGGAGCATTCATCCCACTGTTCCAATATGTCTTAAGAAAGATATGATCACAGCTGAATTAGATCATATGTTGCTAATATTTTTCTCTCGAGAAGATTTCATTATTTATGTAAGTTATTTAAAAGAAGGAGCATATGATATTGATTGTATTGAATTAGACACCACGAGTGATTATCCAGAAGAAGTAGTAGAAGTGAAGAGTTGTGGTTACCGTTGGGTATTTAAGGAAGACGTGGAACAATTAAACCCAACAACCATGTATAGCGCCAATTCTTCAACTCACAAGCACAAGTTCTTGGAAATTGAAGATGGCCAATAA 1311 0.3791 MELCHSKNLVKLPDLSQAPNLLYLDLEGCVKLAHLDPSIGSLEKLCFLNLENCENLVSIPNSIFDLNSLHHLNLSGCSKLIKYQLLDNPWQTEQLKMVDTSESVQSHMTSPVCQTLTRSIRFFYSKRRANLADSLVSSLPRFPTLVVLDISFCNLLQIPDAIGQLQCLERLNIGGNNFITLPHCIEELPKLRELNLEYCMHLKWLPSTLLPMGRSSYGGLYVFNCPNLSNTEGYRLTAISWLIKVIQQVNMQCSFPGCIIKVVIPGNKIPRWFNKQNTGRSMMLDPSPILFDNNWIGIAYCVTFVVHDAPTQFLERRRKVLVGCGFHFKPHRSIHPTVPICLKKDMITAELDHMLLIFFSREDFIIYVSYLKEGAYDIDCIELDTTSDYPEEVVEVKSCGYRWVFKEDVEQLNPTTMYSANSSTHKHKFLEIEDGQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120878g00007 436 Gene3D Ribonuclease Inhibitor 1 114 IPR032675 -
Stsc120878g00007 436 Gene3D Ribonuclease Inhibitor 115 242 IPR032675 -
Stsc120878g00007 436 Pfam C-JID domain 264 410 IPR045344 -
Stsc120878g00007 436 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 118 208 - -
Stsc120878g00007 436 Pfam Leucine rich repeat 143 199 IPR001611 GO:0005515
Stsc120878g00007 436 SUPERFAMILY L domain-like 6 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120878g00007 Stsc-Chr120878 34108 35611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120878g00007 1 194 WRKY Transcription Factor Family AT4G12020 36.000 7.63e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120878g00007 - - ahf:112789053 622.854