Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120878g00006 ATGAATTGCATGACAATTCAAAGCACCTTGTCTCATAAGAAGAATTGGAAATATGATGTGTTCGTGAGTTTCAGAGGCGAGACTCGCAACAACTTCACCGATCATCTTTTTGCTGCTCTCCGCAGACACGGCATATTTGCCTTCAGGGATGATACTAAGCTCCAGAAAGGAGAAGTTATATCAGAAGGGCTTATGGAAGCTATTGAAGGATCACAGGTTTTCATTGTGGTCTTCTCAACGGATTATGCTTCCTCCACATGGTGCTTACAAGAATTGGCAAAAATAGCCGATTGCAGTCAAGTAACGGGACAGCGTGTTCTGCCTATTTTCTATGATGTGAGTCCAGCTGAAGTCAGATGGCAAACTGGAAATTATGAACAAGCCTTTATGAAACATGAAGATAGATACAAACATAATGCAGAGATGATGGAGCAAGTGCGAACATGGAGGAGAGCTCTGACACAGGTAGCCAATCTCTCTGGCTGGGATGTGAAGGATAAGTCACAGTCTGCCGAGATTGAAAAAATTGTCAAAGAAGTAACAAGAATATTGAGTCCCAAGCCATTATCAAGTGTATCTAATGATATAGTTGGGATGGAATCCCCTGTACAAGAACTAGAAAAGCTTCTAGTGTCGGACTCAGAAGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGCATAGGAAAGTCAACTCTTGCAACCATTTTATATGAAAAAATCTCTCATCAATATGATGTTTCATGTTTTGTGGATGATGTAAGTAAAACTTACGGAGATTGTGGTCCGCTTGGTGTCCAAAAGCAACTTCTTTGTCAAGCTTTCATGGAAGAAGATTTTCAGATATACAATCTTTCGCTGGCAGCTAATGTGATACAAACTAGGTTCTGCCCTAGAAAAGTGCTCATAATTCTGGATAATGTTGATAAGGGGAAGCAGTTGGAGAAGTTGGCTATAAAACGGGAATGGGTAGGTAGAGGGAGTAGAATAATCATAGTTTCAAGAGATGAACATATATTGAGAGAGTATGGAGTGGATGATGTTTACAAAGTTCAACTCTTAAATCATGAGAATGCTCTCCGATTGTTTTGCAGAAAAGCATTCAAATATAATCATGTGACAGAAGGTTATGAATGCTTGACAGATTCTGCCTTAACATATGCTAATAGACTGCCATTAGCAATTAAAGTATTGGGTTCTTTTTTGTTTGGCCGAGGTATTTCCGAGTGGAGTAGTGCTTTGGTTAGATTGAAAGAAAACCCAACGAAAGATATTCTAGACGTGCTAAGGATCAGTTTTGATGGACTTGAGGATATGGAAAAAGAAATATTTCTTGATATTGCATGTTTTTTCCCCGGCGAGAATGAAGAATATGTAAATGATATTTTACGTATTCGAGGATTTTATCCTGATATTGGTATAAGAATTCTCATTGATAAATCACTCATAACTCGCAATCAAGGGAGCATCATTATGCACGACATGTTGAGAGAGTTGGGTAGAAGTGTTGTTCGAGAAAAATCACCCAAAGAACCAAGAATGTGGAGCAGGTTATGGAGCTATAAGGATCTAAGCGATGCCTTAATGGAAAACAAGGCAGCAGAAAACCTTGAAGCCATAGTTCTGCCAAAGTTTGTTGAAAATATGGAGAGTTGTCAAAAAGGACAACATTGA 1677 0.3912 MNCMTIQSTLSHKKNWKYDVFVSFRGETRNNFTDHLFAALRRHGIFAFRDDTKLQKGEVISEGLMEAIEGSQVFIVVFSTDYASSTWCLQELAKIADCSQVTGQRVLPIFYDVSPAEVRWQTGNYEQAFMKHEDRYKHNAEMMEQVRTWRRALTQVANLSGWDVKDKSQSAEIEKIVKEVTRILSPKPLSSVSNDIVGMESPVQELEKLLVSDSEDDVRVVGICGMGGIGKSTLATILYEKISHQYDVSCFVDDVSKTYGDCGPLGVQKQLLCQAFMEEDFQIYNLSLAANVIQTRFCPRKVLIILDNVDKGKQLEKLAIKREWVGRGSRIIIVSRDEHILREYGVDDVYKVQLLNHENALRLFCRKAFKYNHVTEGYECLTDSALTYANRLPLAIKVLGSFLFGRGISEWSSALVRLKENPTKDILDVLRISFDGLEDMEKEIFLDIACFFPGENEEYVNDILRIRGFYPDIGIRILIDKSLITRNQGSIIMHDMLRELGRSVVREKSPKEPRMWSRLWSYKDLSDALMENKAAENLEAIVLPKFVENMESCQKGQH 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120878g00006 558 Pfam NB-ARC domain 200 424 IPR002182 GO:0043531
Stsc120878g00006 558 PRINTS Disease resistance protein signature 220 235 - -
Stsc120878g00006 558 PRINTS Disease resistance protein signature 296 310 - -
Stsc120878g00006 558 PRINTS Disease resistance protein signature 389 403 - -
Stsc120878g00006 558 Gene3D - 354 438 IPR042197 -
Stsc120878g00006 558 Pfam TIR domain 17 190 IPR000157 GO:0007165
Stsc120878g00006 558 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 543 IPR044974 GO:0006952
Stsc120878g00006 558 SUPERFAMILY "Winged helix" DNA-binding domain 425 528 IPR036390 -
Stsc120878g00006 558 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 162 IPR035897 -
Stsc120878g00006 558 Gene3D - 10 182 IPR035897 -
Stsc120878g00006 558 SMART till_3 17 159 IPR000157 GO:0007165
Stsc120878g00006 558 Gene3D - 183 350 IPR027417 -
Stsc120878g00006 558 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc120878g00006 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 448 IPR027417 -
Stsc120878g00006 558 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120878g00006 Stsc-Chr120878 31731 33831 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120878g00006 18 543 WRKY Transcription Factor Family AT4G12020 28.733 7.51e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120878g00006 - - aip:107628789 858.596