Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120878g00004 ATGGATTGCATCAGAGTCCAAAGCACCTTGTCTCAGAGCAAGAATTGGAAATATGATGTGTTTGTCAGTTTCAGAGGCGAGACTCGCTTCAACTTCACTGATCATCTTTTTGCTGCTCTTCACAGACACGGCATACTTGCCTTCAGGGATGATACTAAGCTCCAGAAAGGAGGACCTATATCAGCAGGTCTTCTGGAAGCTATTGAAGGATCACAGGTGCTGATCGTGGTCTTCTCAATGAACTACGCTTCCTCCACATGGTGTTTGCAAGAACTCGCAAACATAGCTGATTGCATTCAAATACCGGGACACTCTGTTCTGCCTGTTTTCTATGATGTGACTCCAACAGAGGTGAGAAGGCAAAGTGGAAATTATGAAAAAGCCTTTATGAAACATGAAGAAAGATTCAAAGATGATGCAGAGATGATGGAGCAAGTGCAAAGATGGAAGGGAGCTCTAACACAAGTAGCCAATCTCTCTGGCTGGGATGTGAATGATAAGTCACAATCTGCTGAGATTGAAAAGATTGTTAAAGAGGTGACAAGTATATTGAGTCCCAAACCATCATCAAGTCTATCTAATGATATAGTTGGGATGCACTTCCCTTTAAAAGAACTAGAAAAGGTTCTAGTTTTGGAATCAGATGATGAAGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGCATAGGAAAGTCAACTCTTGCCACTATTTTATATGAAAAAATCTCCCATCAATATGATGTTTCATGTTTTGTGGATGATGTAAGTAAAACTTACGGAGAATATGGTCCACTTGGTGTGCAAAAGCAACTTCTTTGTCAAGCTTTCATGGAAGAAGATCTTATATGCAGTCTTTCATTGGCAACTAATTTGATTCAAGATAGGTTATGCCATAGAAAGGTTCTCATAATTCTAGATAATGTTGATCAGGGGAAGCAGTTGGAGAAATTGGCTATAAAACGGGAATGGCTAGGCAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAGCATATATTGAGGGAGTATGGAGCGGATGATGTTTATAAAGTTAAACTCTTAAGTGATGAGAATGCTCTCCAATTGTTTTGCAGAAAAGCTTTCAAATGTAATCACGTTACAGCAGGTTATGAAAGCCTGACATATTCTGCCTTAGCATATGCTAATCGATTGCCATTAGCAATTAAAGTATTAGGTTCGTTTTTGTTTGGCCGAAGTATTTCCGAGTGGAGTAGTGCTTTGGGTAGATTGAAAGAAAACCCAACAAAGGATATTCTAGATGTGCTAAGAATCAGTTTTGATGGACTTGAGAATATGGAAAAGGAAATATTTCTTGATATTGCATGTTTTTTCCCCGATGAGGATGAAGATTATATAAAAGATATTTTACGTATTCGAGGATTTCATCCTGATATTGGTATAAGAATTCTCATTGATAAATCACTCATAACTCGTAATCGGTGGAGAATTGTTATGCACGATCTATTGAGAGAGTTGGGTAGAAGCATTGTTAGAGAAAAATCACCGAAAGAACCACAAAAGTGGAGCAGGTTATGGAATCAAAAGGATCTAAGCAATGTCTTGCGGGAAAACAAGACAGCAGAGAACCTTGAAGTTGAAGCCATAGTTCTACCAAGATTTCTTGAAATTAGGGAAGAGTTGTCAGTTGAAGCTTTATCAAAAATGAGTCACCTGAAATTACTCATGGTTCGCAAAGTGAATTTCTCAGGGTGCCTATATTTTCTTTCTTATGAGTTGGGATATCTTTCCTGGGAAGAATATCCTTTCACAAGTTTGCCGCCAAGCTTTCAGCCAATTAAACTAGTTAAATTGATCCTACATCAGAGCAACATCAAAGAACTTTGGGAGGGAATAAAGGATCTACATAATTTGACACGTATAGAACTATGTCATTCCAAAAATCTTGTAAAGATACCAAATTTATCTCAGGCCCCAAATCTTGAGCACCTAGACCTTGAAGGATGTATTAAACTTGTTCACCTTGATCCATCCGTCGCTTCTTTAAAAAAGCTTAGTTTCTTGAATTTGGAAAACTGCAAAAACCTTGTTAGTATTCCCAGCAACATATTTGATCTTAGTTCCCTTTGTTCTTTACATCTATCGGGGTGTTCGAAATTACTTAAATATCAGTTGTTAGATAAACCAAGGCAAAGCGAGCAGTTGAATACAGGTCAAGGTGTACAAAGGTACATGAGATCCTCCATATGCCAAACTCTTACAAGGCCTCTCCATTTTTTCTCTTCTAGAAGACGTGCAAATTCAATTGGTTTGTTGGTGCCTTCTTTGTGTCGTTTCTCAACTTTGGTATCTCTTGACGTAAGTTTCTGCAATCTAGTTCAAATCCCTGATGCTATTGGACAGTTACATTTTTTAGAATTTTTAAACATAGGGGGAAACAATTTTGTTACACTACCTCATTGCATCAAGGAACTTCCCAAGCTTAGGGAGTTCAACTTGCAGTACTGTAAGAATCTAAAGTGGTTGCATAGTACCCTTTTGCCGATAGGAGGAGGTACCTATGGAGGAATATATGTTTTCAACTGCCCCAGTTTGAGTGACACTGAACTCTGTTCTCTCACTGTTGTTTCCTGGATGATAAAATTTATTATTCAGGTGGTGGACATGCAATGGTCTTTGCCCAAGGGCAACGTTAAAGTTGTTATTCCAGGAACCAAAATTCCAAGGTGGTTCAACAAACAGAATACGGGCAGTTCAATGAAGCTGGATCCATCTCCCATTGTGGATGACAATAATTGGATTGGCATTTCTTGTTGTGTAACATTTGTTGTTCATAATGCTCCAACTCAATTGCCTGAAGGAAGGAAATTTGCTACTCTTATCAGTTGTGGTTTTCGTTATGAACAACATGGGGGCATTTATCCCGTTGTTGCAATACGTCTTGTGAAAGATTTGATCACAACTCAATTAGATCATATGTTGCTAATATTTTTCTCCAGGGAAAATTTCACTAATAATTATATAATCTATTTAAAAGAAGGAACCTTTGATCTTGATGGTATTGAATTTGCCACCACAAGTGATTATCCGGAAGAAGTAGTCGAAGTGAAGAGTTGTGGTTATCGTTGGGTATTCAAGGAAGATTTGGAACAACTAAACCCAACAATGATGTACACCGCCAATTCTTCAAATCAGAGTCAGAAGCGCAAGTTTTTGGCAATTGAAGAGTAG 3210 0.3826 MDCIRVQSTLSQSKNWKYDVFVSFRGETRFNFTDHLFAALHRHGILAFRDDTKLQKGGPISAGLLEAIEGSQVLIVVFSMNYASSTWCLQELANIADCIQIPGHSVLPVFYDVTPTEVRRQSGNYEKAFMKHEERFKDDAEMMEQVQRWKGALTQVANLSGWDVNDKSQSAEIEKIVKEVTSILSPKPSSSLSNDIVGMHFPLKELEKVLVLESDDEVRVVGICGMGGIGKSTLATILYEKISHQYDVSCFVDDVSKTYGEYGPLGVQKQLLCQAFMEEDLICSLSLATNLIQDRLCHRKVLIILDNVDQGKQLEKLAIKREWLGRGSRIIIVSRDEHILREYGADDVYKVKLLSDENALQLFCRKAFKCNHVTAGYESLTYSALAYANRLPLAIKVLGSFLFGRSISEWSSALGRLKENPTKDILDVLRISFDGLENMEKEIFLDIACFFPDEDEDYIKDILRIRGFHPDIGIRILIDKSLITRNRWRIVMHDLLRELGRSIVREKSPKEPQKWSRLWNQKDLSNVLRENKTAENLEVEAIVLPRFLEIREELSVEALSKMSHLKLLMVRKVNFSGCLYFLSYELGYLSWEEYPFTSLPPSFQPIKLVKLILHQSNIKELWEGIKDLHNLTRIELCHSKNLVKIPNLSQAPNLEHLDLEGCIKLVHLDPSVASLKKLSFLNLENCKNLVSIPSNIFDLSSLCSLHLSGCSKLLKYQLLDKPRQSEQLNTGQGVQRYMRSSICQTLTRPLHFFSSRRRANSIGLLVPSLCRFSTLVSLDVSFCNLVQIPDAIGQLHFLEFLNIGGNNFVTLPHCIKELPKLREFNLQYCKNLKWLHSTLLPIGGGTYGGIYVFNCPSLSDTELCSLTVVSWMIKFIIQVVDMQWSLPKGNVKVVIPGTKIPRWFNKQNTGSSMKLDPSPIVDDNNWIGISCCVTFVVHNAPTQLPEGRKFATLISCGFRYEQHGGIYPVVAIRLVKDLITTQLDHMLLIFFSRENFTNNYIIYLKEGTFDLDGIEFATTSDYPEEVVEVKSCGYRWVFKEDLEQLNPTMMYTANSSNQSQKRKFLAIEE 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120878g00004 1069 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc120878g00004 1069 Gene3D - 185 351 IPR027417 -
Stsc120878g00004 1069 PRINTS Disease resistance protein signature 673 689 - -
Stsc120878g00004 1069 PRINTS Disease resistance protein signature 220 235 - -
Stsc120878g00004 1069 PRINTS Disease resistance protein signature 295 309 - -
Stsc120878g00004 1069 PRINTS Disease resistance protein signature 388 402 - -
Stsc120878g00004 1069 Gene3D - 353 437 IPR042197 -
Stsc120878g00004 1069 Gene3D Ribonuclease Inhibitor 754 870 IPR032675 -
Stsc120878g00004 1069 Gene3D Ribonuclease Inhibitor 507 732 IPR032675 -
Stsc120878g00004 1069 Pfam TIR domain 17 192 IPR000157 GO:0007165
Stsc120878g00004 1069 SUPERFAMILY L domain-like 492 837 - -
Stsc120878g00004 1069 Pfam C-JID domain 895 1043 IPR045344 -
Stsc120878g00004 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Stsc120878g00004 1069 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Stsc120878g00004 1069 Pfam NB-ARC domain 205 423 IPR002182 GO:0043531
Stsc120878g00004 1069 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 716 IPR044974 GO:0006952
Stsc120878g00004 1069 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc120878g00004 1069 Gene3D - 11 184 IPR035897 -
Stsc120878g00004 1069 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Stsc120878g00004 1069 SMART till_3 17 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120878g00004 Stsc-Chr120878 9224 13134 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120878g00004 13 824 WRKY Transcription Factor Family AT4G12020 31.813 1.06e-93 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120878g00004 - - adu:107476580 1317.37