Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120878g00003 ATGGATTGCATGAGAATCCGAAGCATTTTGTCCCATAGGAAGAATTGGAAATATGATGTGTTTGTGAGTTTTAGAGGCGAGACTGGCAACAACTTCACCGATCATCTTTTTGATGCTCTCCACAAACACGGCATACTTGCCTTCAGGGATGATACTAAACTTGAGAAAGGAGGACTTATATCAGAAGGGCTTATGCAAGCTATCGAAGGATCACATGTTCTGATTGTGGTCTTCTCTATGAACTATGCTTCGTCCACATGGTGCTTGCAAGAACTCGCAAACATAGCTGATTGCATTCAAATACCGGGACAGCATGTTCTGCCTATTTTTTATGACGTGAGCCCATCTGAGGTGAGAAAGCAAAGTCGAAAGTATGAAGAAGCCTTTGTGGAACATGAAGAAAGATTCAAAGATGATGCAGACATGATGGAGCAACTGCCAAGATGGAGGGCAGCTCTAACACAAGTAGCTAATCTCTCTGGCTGGGATGTGAAGGATAAGTCACAATCTGTTGAGATTGAAAATATTGTCAAAGCTGTAACAAGCAAACTGAGTCCCAAACTATCATCATGTCTATCTAATGATATAGTTGGGATGCACTCCCCTTTAGAAAAAATAGAAAAGCTTCTAGTTTTGGACTCTGAGGATGATGTTAGAGTTGTAGGGATTTGGGGAATGGGCGGCATAGGAAAGTCAACTCTTGCCACCATTTTATATGAAAAAATCTCTCATCAATTTGATGTTTCATGTTTTGTGGATGATGTAAGTAAAACTTACAGTGACTATGGAACACTAGGTGTCCAAAAGGAACTTCTTTGTCAAGCTTTTATGGACGAAGATTTTCAGATATGCAATCTTTCTTTGGCAAGTAATTTGATGCAAACTAGATTTTGCCATAGAAAGGTTCTTATGATTCTGGATAATGTTGAGACAGGGACTCCGTTGGAGAAGTTGGCTATAAAACGAGAAAGGCTAGGTAGAGGGAGTAGAATAGTCTTAGTTTCTAGAAATGAACATATACTGAGAGAGTATGGAGTGGATGGAATTTACAAAGTTAAACTCTTAAATAATGAGAATTCTCTCCAATTGTTTTGCAGTAAAGCTTTCAAATGTAATCAAGTTACAAAAGATTACGAGAGACTGACAAAGTCTGCATTAACATATGCCAAGGGACTTCCCTTAGCAATTAAAGTATTGGGCTCATTTTTGTTTGGGAGAGATGTCTCTGAATGGAGTAGTGCATTGGTTAGACTGAAAGAAAAGCCAACAAAAGATATTATGGATGTGCTTAGAATAAGTTTTGATGGACTTGAGGATATGGAAAAAGAAATATTTCTTGATATTGCATGTTTCTTTAGCAATGAGACCGAAGGATGTGTAAAGCATATTTTATGTATCCGGGGATTTCATCCTGACATTGGTATCAGAGTTCTTATTGATAAATCACTTCTAACTCGTGTTCCATGGAGGATTGTTATGCATGATCTGTTGAGAGAGTTGGGTAGAAGTATTGTTCGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGAATCAAAAGGATCTCAGAGATGTCTTGCGGGAAAACCAGAGAGCAAAGAACCTTGAAGCCATAGTTCTACGAAGATTTCTTGAAACGAAGGAAGAGTTGTCCGTTGAAGCCTTATCAAGAATGGATCAACTAAATTTACTGATACTTTGGCAAAAGGAATTTCTCAGGACCTCTGCATATTCTTTCTAA 1749 0.3848 MDCMRIRSILSHRKNWKYDVFVSFRGETGNNFTDHLFDALHKHGILAFRDDTKLEKGGLISEGLMQAIEGSHVLIVVFSMNYASSTWCLQELANIADCIQIPGQHVLPIFYDVSPSEVRKQSRKYEEAFVEHEERFKDDADMMEQLPRWRAALTQVANLSGWDVKDKSQSVEIENIVKAVTSKLSPKLSSCLSNDIVGMHSPLEKIEKLLVLDSEDDVRVVGIWGMGGIGKSTLATILYEKISHQFDVSCFVDDVSKTYSDYGTLGVQKELLCQAFMDEDFQICNLSLASNLMQTRFCHRKVLMILDNVETGTPLEKLAIKRERLGRGSRIVLVSRNEHILREYGVDGIYKVKLLNNENSLQLFCSKAFKCNQVTKDYERLTKSALTYAKGLPLAIKVLGSFLFGRDVSEWSSALVRLKEKPTKDIMDVLRISFDGLEDMEKEIFLDIACFFSNETEGCVKHILCIRGFHPDIGIRVLIDKSLLTRVPWRIVMHDLLRELGRSIVREKSPKEPRKWSRLWNQKDLRDVLRENQRAKNLEAIVLRRFLETKEELSVEALSRMDQLNLLILWQKEFLRTSAYSF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120878g00003 582 Gene3D - 10 183 IPR035897 -
Stsc120878g00003 582 FunFam Disease resistance protein (TIR-NBS-LRR class) 356 438 - -
Stsc120878g00003 582 Pfam TIR domain 17 197 IPR000157 GO:0007165
Stsc120878g00003 582 Gene3D - 184 348 IPR027417 -
Stsc120878g00003 582 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc120878g00003 582 SUPERFAMILY "Winged helix" DNA-binding domain 425 529 IPR036390 -
Stsc120878g00003 582 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 568 IPR044974 GO:0006952
Stsc120878g00003 582 SMART till_3 17 159 IPR000157 GO:0007165
Stsc120878g00003 582 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc120878g00003 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 448 IPR027417 -
Stsc120878g00003 582 Pfam NB-ARC domain 203 424 IPR002182 GO:0043531
Stsc120878g00003 582 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 162 IPR035897 -
Stsc120878g00003 582 Gene3D - 354 438 IPR042197 -
Stsc120878g00003 582 PRINTS Disease resistance protein signature 296 310 - -
Stsc120878g00003 582 PRINTS Disease resistance protein signature 220 235 - -
Stsc120878g00003 582 PRINTS Disease resistance protein signature 389 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120878g00003 Stsc-Chr120878 6004 8013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120878g00003 18 582 WRKY Transcription Factor Family AT4G12020 28.873 2.46e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120878g00003 - - aip:107628789 880.167