Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120877g00021 ATGGGTTGTGCAAATTTGGCATTGCATTTGCGAATTCTCATCATGACAGTGATGGTTTTTACAACTACTTTCTGTGTTGGGGACACTGACCCCCTTGATGTTGCAGCAATCAATAGCTTATATGTAGCTCTAGGATCACCACCCCTTCAAGGGTGGAAACCTTCAGGAGGAGATCCATGTGTGGAACAGTGGCAAGGTGTCAGCTGTGTCTTCTCCAACATAACTGCTTTACATCTTGGAGGCCTGAATTTGAGTGGACAGCTGGGAAGTAATTTGGATTTCCCATCCATCATAGAAATGGATATTAGCAACAACAGCATTGGAGGAACCATTCCATCCACTCTGCCCTCTACTCTGAAGAGATTGTCTCTTTCGGATAATAAGTTAAATGGAAGCATTCCAGATGCCTTATCCATATTAACTCAACTAACAGATTTGTCATTAGACAGTAACCATCTAACTGGACAAATCCCAGATGTGTTTCTGCAGTTCACCAGTTTGACAAATATGAATCTGTCAGGTAACAACTTGAGTGGTCAGCTACCTCCCTCGATTGCGAATTTATCATCTCTTACTGCATTACACTTGCAGAACAATCTACTTGGTGGAACCCTTTTTGTTTTGGAGGACCTCCCTCTTCAGAATCTAAATATAGAGCACAATCTATTCTCTGGGCCGATTCCTCCGAAGTTGTTGAATATTCCTGAATTCAGAAAAGATGGGAATCCTTTTAATACTAGTGTTATTCCCTCACCTCCAGCTGCAGCTCCTTCACCTGAAGCCATGGTTCCTTCTCCTTCCACTGAAAAGTCACCTGGTAGAGTGGCAAAAAGCCCTTCAATGTCCATGAAAGCTCCAGCACCTTCGATTACTAGGAGTTCCTTCAAATTTAAGAACATAATTTGGTGGACTGCTGGTGTCGGGATCTTAATATTTATTGCATTAGGAATTTGTCTTTTTATGTGTTTGTACTGTAAGAGAAGACCAAGGAGCAAGAATTATGAGGAACACAAAGACATGGGTGTTTATATTGATGAGGAGAAAGGACATGGCTCCAAACTTCCACCACTGCAGCAAGCTCCACCACATCCTCTCCCAATAATTCCTGGAGAGAAGTTCATCAGTTCAGCTAAATCCATCAAAGAAATCGAAGGTGGAAAGCAAATTGTGACTAGTTCCATCAGGGTTTATTCTGTTGCATCGCTTCAGCAGTATACAGATAGTTTTTCGCAAGAAAATTACATCGGAGAAGGGACACTTGGCCCTGTTTATAAGGGTGAGCTCCCTGGTGGAAAGTTACTGGCTGTGAGGAAGCTGAACAGTTCCATGGTGCAGAATCATGAGCAGTTTCTTCAATTAGTATCCAAAATATCCAAAATTCAACATGCTAACATTGTAAAACTCATAGGCTACTGCTCCGAGCATAGCCAACAACTACTTGTGTATGAGTATTGCAGCAACGGAACCCTTCATGATGCATTGCATACTGATGATAGTGCTCGTGTTAAACTTTCATGGAACGAACGAATCCAGGTGTCACTGGGAGCTGCTAGAGCTTTACAGCATCTGCATGAGAACTTTCAGCCACCTATTGTGCACCGAAATTTTCGATCTTCTAATGTTCTCCTGAATGACAAGATGGAAGTGTGCATCTCTGACTGCGGATTAGGTTCTTTACTATCTTCAGGCTCTGCTGATCAGGGCTATGATGCTCCAGAGTTTGAATCAGGGAGTTATACACAACAGAGCGATGTATTCAGTTTCGGAGTCATGATGCTAGAACTCCTAACCGGGCGAAAAGCCTTCGACAGCACGCGGCCGCGGGGAGAACAGCATGTGGTGAGATGGGCAGTCACTCAGCTCCATGACATTGATGCATTGTCTGAAATGGTAGATCCTTCCTTGAATGGAGCCTACCCTACAATGAAATCCTTGTCACGTTTTGCTGATATCATTTCTTCATGTATACAGCATGAACCCGAATTCCGGCCAGCAATGTCTGAAGTTGTTCAGGATCTCTTGCGAATCACGTCAAACCTTGGATTAACATGA 2052 0.4323 MGCANLALHLRILIMTVMVFTTTFCVGDTDPLDVAAINSLYVALGSPPLQGWKPSGGDPCVEQWQGVSCVFSNITALHLGGLNLSGQLGSNLDFPSIIEMDISNNSIGGTIPSTLPSTLKRLSLSDNKLNGSIPDALSILTQLTDLSLDSNHLTGQIPDVFLQFTSLTNMNLSGNNLSGQLPPSIANLSSLTALHLQNNLLGGTLFVLEDLPLQNLNIEHNLFSGPIPPKLLNIPEFRKDGNPFNTSVIPSPPAAAPSPEAMVPSPSTEKSPGRVAKSPSMSMKAPAPSITRSSFKFKNIIWWTAGVGILIFIALGICLFMCLYCKRRPRSKNYEEHKDMGVYIDEEKGHGSKLPPLQQAPPHPLPIIPGEKFISSAKSIKEIEGGKQIVTSSIRVYSVASLQQYTDSFSQENYIGEGTLGPVYKGELPGGKLLAVRKLNSSMVQNHEQFLQLVSKISKIQHANIVKLIGYCSEHSQQLLVYEYCSNGTLHDALHTDDSARVKLSWNERIQVSLGAARALQHLHENFQPPIVHRNFRSSNVLLNDKMEVCISDCGLGSLLSSGSADQGYDAPEFESGSYTQQSDVFSFGVMMLELLTGRKAFDSTRPRGEQHVVRWAVTQLHDIDALSEMVDPSLNGAYPTMKSLSRFADIISSCIQHEPEFRPAMSEVVQDLLRITSNLGLT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120877g00021 683 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Stsc120877g00021 683 SUPERFAMILY Protein kinase-like (PK-like) 390 674 IPR011009 -
Stsc120877g00021 683 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
Stsc120877g00021 683 Gene3D Transferase(Phosphotransferase) domain 1 485 680 - -
Stsc120877g00021 683 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Stsc120877g00021 683 MobiDBLite consensus disorder prediction 246 284 - -
Stsc120877g00021 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 677 IPR046959 -
Stsc120877g00021 683 Gene3D Phosphorylase Kinase; domain 1 373 484 - -
Stsc120877g00021 683 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 485 681 - -
Stsc120877g00021 683 SUPERFAMILY L domain-like 33 235 - -
Stsc120877g00021 683 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 375 484 - -
Stsc120877g00021 683 ProSiteProfiles Protein kinase domain profile. 409 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120877g00021 683 Gene3D Ribonuclease Inhibitor 35 250 IPR032675 -
Stsc120877g00021 683 Pfam Protein tyrosine and serine/threonine kinase 412 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120877g00021 Stsc-Chr120877 145124 149253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120877g00021 12 668 Strubbelig Receptor Gene Family AT1G53730 41.715 2.82e-157 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc120877g00021 PK_Tyr_Ser-Thr 7.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120877g00021 - - gmx:100794130 919.457