Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120877g00017 ATGGCTGATGGTGACGTCAACTTTTCGGAACTGTTCGATGCTGACGATGACGATGACATGTGCTATATCGATATGCAGACGGTGATGCAGGTTCTCGATGAGGATTACGACCCTCAGCAGAGTAGTCCTGATGATTTTTCATTACAAAATGGTTCATCTGGTGAATCTGGCGTCCATGATCCTTTTCAGCTTCAGAATGGGTGTCAATTGTTAGAAGAAGAACCGCTTGTTTCTAGGTTAGAGTTGGATTCAGCCACTGACTGCTCTCCATTCTGTTCAGACGTGTCAGATTCTGGGGCCAAAGATTCAGTTCGTTTTTCAGCAAATCATGTGCTTGTGCATGAATGTGAAAATCAGGGACTTCCAACTCAGGCTTGCTCCTCCACGGAAAAGATAGGGGTTTCTAAATCTGAGACATCTACTTTTGGTTTGGAAACTAATTTCCTTGAGGCACATTCGAACAACGTATCAGTCTGTCAGGACAATTTGAATAAGAATATGTGGAAGAGTGGAAATGAGAGCCAATTCAAGCATGCGGGAGAGGATGTTGAATCAGAACATGCTTCTCACAGTTCTGTCATTGAGAATGGTGATTTAAATTTTGAAGATTGTGTTGAAGACACCATTCGAGGTGCTTATGGGCAACAGGAAAGTGACTTGTGCACATCTTTTCAAATATCTGATATGGATGCTGATAGATCTTTGCATGCTTCAACTTCAATTGATTCTGCTCTTTATCAAGGTTCCCATTTTCCTAGTGATTTGTGTGGTGACTATGTATATTCAAATTATCATCAGGGAGGAACATATGATAGAACATTTGCCCATGACCCGTCTTTAGGGTTTATCCCTAATGGTATTTGTTCTAAGTCATGGACTAATAAAGAAATGATGACTAACCTGAAGGCTGAAAACATGGAGTTCTGTACAGATATGGCAAATATCAGTGGTGGGATGCACTCAAATAATACTGGGGGGTTATCTATTCATGATAGTCAGTTTATGCTAGCAGATAGTGGCTATTTGTCATATTTTGCTAGTAACGGTGCTTTTGAAGACAAGGTGTCAGCTCCGCTTTCAACTTATGCTTCACATGGAGATCAATCACTTTGTATGAAAGCTGAAAGGAACAAACTGGTTACAACATATCAAAATAATTTTCAGAACAATGATGATGCTCAGTTCAATATTGGCCAAGAGGTGAAACAGTTACCTGATTTTTTCCCCTCTGTGGAATGTAAGAGTTATGGATCTTTTCCTTTTGAGGATAGTTATACAGTAATAACTTCTGAAATAGGCAATCATTATCAAGATACTGTTAATGGAACTGCTAGTAAACTTCAAGGAAACATAGGCTATTTGACTGCAGACGAATGTTTGCCCCATGCCCAATCTTCCATTGCTGTTGAGAAGCAGTTTGGTTGTGTAAAGAGAGGAGGATCCGAAATGATTCAGCGTAGGCACATTGAATCCCATCATTCGAAAGGAACTGCCCATAATTTCCGTGTTGAGGACACTGATGTCTGTATAATTGAAGACATCAGTCATCCTGTGCCTTCAAGTCAATCTTCAGATGTTCATAATTCCCTTAGTATAGTCCAATCTTCCAGACATGTTGGTTCCGAACATTCCACCGTTGGAAGCACAAGAGTAAAGGCATGCGATGAGCGAAATATATTACGAGTTGCATTACAGGATCTATCTCAACCGAAGTCAGAAGTTAGTCTGCCAGTTGGATTATTGGCAGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGCTTATATTGCTCAGGTGGAATTCTTGCAGATGATCAGGGACTTGGCAAAACAGTGTCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAAAATTTTCTGCATGTCCCAATGCCCAAAATGGTGAATTAGAAACTTTGAATCTGGATGGAGAGGATGACGGGCTTCCTCAAAGTAGTTTGTTAAAGAAGGAATCCGATTCATGCGGAGATATGTCAATTAGAGATCCAGTCAAGAGCAAGAGTTTATCATCGCAAGCAAAGGGAAGGCCATCTGCAGGTACCCTTATTGTCTGCCCCACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCACAATAAGGTAACAAGCCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACGAAAGACCCTCATGAGGTGGCCAAGTATGATGTTGTTCTGACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCGCTAGCTGACAAAGACAATGAAGAGAAGGGAATGTTTGAAGATTCTGGGGTACCAAGTAGGAAGAGGAAAAACCCTTCTAATTCTAGTAAAAGTGGCAAGAAGCGATTGGACAGCACATTGCTTGAGGCTGTTGCTCGCCCTCTTGCAAAGGTATCATGGTTTAGGGTTGTCCTGGATGAGGCTCAGAGTATAAAGAATCACCGAACTCAAGTTGCAAGGGCCTGTTCAGGTCTTCGTGCCAAGCGCAGATGGTGCTTGTCTGGGACCCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGCCCCTTATGACATTTATACGTCATTCTGTTCTATGATTAAAAATCAGATTAGCAGAAATCCGACAAAAGGGTACAAAAAGATACAAGCTGTCCTAAAGACAATAATGTTACGTCGGACCAAAGGCACATTTCTTGATGGGGAGCCTATTATTTCCTTGCCACCTAAATTTGTAGAGCTTAAAAAAGTTGAGTTTTCAATGGCGGAGCGTGATTTCTATTCCAAACTGGAGGCTGATTCCCGCGCGCAGTTTCAGGAATATGCTGCTGCTGGAACTGTAAAACAAAATTACGTCAACATTTTGCTTATGCTTTTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTCGTTAAGCGTTACAATTCCAACACTCTATGGAGATCTTCTGTTGAGACAGCAAAAAAGCTTCCCCAGGAAAAACAATTATCTCTTCTTAAGTGTTTGGAGGCTTCCTTGGCTCTCTGTGGAATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTCTTCTGTAGCCAGTGCATTTCTGAGCATCTTACAGGTGATGACAATCAGTGCCCTGCTACAAATTGCAAAAGTCGACTCAGCATGTCTACTGTGTTTGCAAAAGCGATGCTCAGTGGTTGTATGTCTAACCAGGGTTGTGATAGTTCACCTAGTTACTCTGGTTCTGAAGTGGAGGAATCCGAGCCTTGGTCTCGGAGTCAGCCTTATGATTCTTCTAAAATTAAGGCTGCTCTAGAGGTTTTGAAGTCATTGAGTAGGGTACAGTCCAATACACCCAAAATCATTTCTGCACCTAGTACTCCTGCAGAAAATAGTGAATGCCCTGGGGTATCCTGTGATGTTAACAATGGGAAATGCTTGGAAGATATTCCTGAAAGTCAACACCTCTCTGAGAATAGCAGTTCTAATGGCACAGGAGAAAAAGCAATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGCAATCTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCTGTCATTGCGAGAGATAAAGCTGTTAAAGATTTTAATACTCTCCCAGAGGTTTCGGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTGGATTTATGGTGGAATCCTACTACTGAAGATCAAGCAATTGATAGAGCACATCGAATTGGGCAGACCCGTCCTGTGACTGTTTTGCGTTTAACTGTGAAAGATACTGTTGAAGATCGTATTTTGGCTTTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGTCGTCAGAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 4008 0.4182 MADGDVNFSELFDADDDDDMCYIDMQTVMQVLDEDYDPQQSSPDDFSLQNGSSGESGVHDPFQLQNGCQLLEEEPLVSRLELDSATDCSPFCSDVSDSGAKDSVRFSANHVLVHECENQGLPTQACSSTEKIGVSKSETSTFGLETNFLEAHSNNVSVCQDNLNKNMWKSGNESQFKHAGEDVESEHASHSSVIENGDLNFEDCVEDTIRGAYGQQESDLCTSFQISDMDADRSLHASTSIDSALYQGSHFPSDLCGDYVYSNYHQGGTYDRTFAHDPSLGFIPNGICSKSWTNKEMMTNLKAENMEFCTDMANISGGMHSNNTGGLSIHDSQFMLADSGYLSYFASNGAFEDKVSAPLSTYASHGDQSLCMKAERNKLVTTYQNNFQNNDDAQFNIGQEVKQLPDFFPSVECKSYGSFPFEDSYTVITSEIGNHYQDTVNGTASKLQGNIGYLTADECLPHAQSSIAVEKQFGCVKRGGSEMIQRRHIESHHSKGTAHNFRVEDTDVCIIEDISHPVPSSQSSDVHNSLSIVQSSRHVGSEHSTVGSTRVKACDERNILRVALQDLSQPKSEVSLPVGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPKFSACPNAQNGELETLNLDGEDDGLPQSSLLKKESDSCGDMSIRDPVKSKSLSSQAKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLADKDNEEKGMFEDSGVPSRKRKNPSNSSKSGKKRLDSTLLEAVARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYAPYDIYTSFCSMIKNQISRNPTKGYKKIQAVLKTIMLRRTKGTFLDGEPIISLPPKFVELKKVEFSMAERDFYSKLEADSRAQFQEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSVETAKKLPQEKQLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCSQCISEHLTGDDNQCPATNCKSRLSMSTVFAKAMLSGCMSNQGCDSSPSYSGSEVEESEPWSRSQPYDSSKIKAALEVLKSLSRVQSNTPKIISAPSTPAENSECPGVSCDVNNGKCLEDIPESQHLSENSSSNGTGEKAIVFSQWTRMLDLLEVCLKQSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120877g00017 1335 MobiDBLite consensus disorder prediction 36 59 - -
Stsc120877g00017 1335 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 789 919 - -
Stsc120877g00017 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1016 1074 IPR013083 -
Stsc120877g00017 1335 SMART ring_2 1023 1061 IPR001841 -
Stsc120877g00017 1335 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1163 1330 IPR001650 -
Stsc120877g00017 1335 CDD DEXDc_SHPRH-like 585 907 - -
Stsc120877g00017 1335 Gene3D - 922 1334 IPR027417 -
Stsc120877g00017 1335 MobiDBLite consensus disorder prediction 761 781 - -
Stsc120877g00017 1335 ProSitePatterns Zinc finger RING-type signature. 1038 1047 IPR017907 -
Stsc120877g00017 1335 SMART helicmild6 1194 1277 IPR001650 -
Stsc120877g00017 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1334 IPR027417 -
Stsc120877g00017 1335 ProSiteProfiles Zinc finger RING-type profile. 1023 1062 IPR001841 -
Stsc120877g00017 1335 Pfam SNF2-related domain 605 984 IPR000330 GO:0005524|GO:0140658
Stsc120877g00017 1335 SUPERFAMILY RING/U-box 1020 1067 - -
Stsc120877g00017 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 907 IPR027417 -
Stsc120877g00017 1335 Pfam Helicase conserved C-terminal domain 1173 1277 IPR001650 -
Stsc120877g00017 1335 Gene3D - 555 644 IPR038718 -
Stsc120877g00017 1335 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Stsc120877g00017 1335 CDD SF2_C_SNF 1180 1287 - -
Stsc120877g00017 1335 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 340 1334 - -
Stsc120877g00017 1335 SMART ultradead3 581 897 IPR014001 -
Stsc120877g00017 1335 MobiDBLite consensus disorder prediction 760 795 - -
Stsc120877g00017 1335 Gene3D - 794 908 IPR038718 -
Stsc120877g00017 1335 Gene3D - 680 770 IPR038718 -
Stsc120877g00017 1335 Pfam Zinc finger, C3HC4 type (RING finger) 1023 1059 IPR018957 GO:0046872
Stsc120877g00017 1335 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 869 IPR014001 -
Stsc120877g00017 1335 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 678 766 - -
Stsc120877g00017 1335 MobiDBLite consensus disorder prediction 650 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120877g00017 Stsc-Chr120877 112444 120487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120877g00017 476 1334 RAD5 or RAD16-like Gene Family AT1G61140 60.179 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc120877g00017 SNF2_N 4.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120877g00017 - - lang:109332935 1748.02