Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120877g00015 ATGGATAATTTTGTCACATTATTATTAAAGTTAAAGCTCAGAAGCTTGTATACTATAATGTTGGTACTTTATGTGTTATGCTTAAGGGGTGTGGTATCCTCCTCTAGACATCAAGGTTACTGGGGGACTGGAAATCAGAGGAAAGTAACCATGATGATGAACAACAACAACAATAAGAATAATAATAATAATAATAATAATAATAATAATAATAATGGTGATGTTGTGAGAGAGTTGCCTGGGCAACCTGCTGTGGATTTTGAGCACTATGCTGGTTATGTTACTGTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTTTGAGGCCATTACCAACCCAGATGATAAGCCTTTGGTCCTATGGCTTAATGGAGGACCTGGATGTTCTTCAGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACTCTGATGGCCAGGGACTTAAATTTAATAACTTCTCTTGGAACCAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTCTCCTACTCAAACACAAGCAGTGATTATCAACAACTGGGTGATGAAATAACAGCTAACGATGCTTACAATTTTCTGCACAACTGGTTCCTCAAGTTCCCATCATATAGAACAAGGACTTTTTACATAGCAGGGGAGAGTTATGCAGGGAAGTATGTGCCGGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCCCTTCATATTAATCTCAAGGGCATTATGTTAGGGAATCCAGAAACATCTGATGCTGAGGATTGGATAGGGCTAGTAGACTATGCTTGGAGTCATGCAGTTATATCAGACGAGACACACACAACAATCAAAACAAGCTGTGACTTCAACAGCACTGATCCATGGAGTAACCAAGATTGTAGTGACGCAGTTGATGAAGTCCTCAAACAATACAAAGAGATTGATATCTACAGCCTCTACACTTCTACTTGCTTTGCCTCTACGGCACGTTCTAACACTAACAACGCCCACCAGCAGCAGCAAACTTTCATGGCAAATAAGCGCTCATCATCTACAATGATGCCAAGAATGATGGGTGGTTATGATCCATGCTTGGATGACTATGCTAGAGCTTATTATAATAGAGCAGATGTTCAGAAGGCTCTACATGCTGGTGATGGTCACAATCTCAAGAATTGGAGTATTTGCAACAATGATATATTCAATGGGTGGGGAGATTCAAAGGCAAGTGTAGTACCAATATACAGGAAGCTAATAGGAGGAGGGCTGAGGATATGGGTATACAGCGGAGACACAGATGGAAGAGTGCCAGTGCTGTCAACAAGGTACAGTTTGAGTTCACTTGGATTGAGAGTGAGTAAGGCATGGAGGCCATGGTACCATGAAAATGAGGTAAGTGGTTGGGTTGAAGAATATGAAGGTCTCACATTTGCAACTTTCAGAGGAGCTGGCCATGCTGTTCCCTGTTTCAAACCAAGCAGCTCTCTCGCCTTCTTCTCTTCCTTCCTTCGTGGACAATCCCCTCCTTCTACTAAATAA 1548 0.4186 MDNFVTLLLKLKLRSLYTIMLVLYVLCLRGVVSSSRHQGYWGTGNQRKVTMMMNNNNNKNNNNNNNNNNNNNGDVVRELPGQPAVDFEHYAGYVTVNETNGRALFYWFFEAITNPDDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGQGLKFNNFSWNQEANMLFLESPVGVGFSYSNTSSDYQQLGDEITANDAYNFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHINLKGIMLGNPETSDAEDWIGLVDYAWSHAVISDETHTTIKTSCDFNSTDPWSNQDCSDAVDEVLKQYKEIDIYSLYTSTCFASTARSNTNNAHQQQQTFMANKRSSSTMMPRMMGGYDPCLDDYARAYYNRADVQKALHAGDGHNLKNWSICNNDIFNGWGDSKASVVPIYRKLIGGGLRIWVYSGDTDGRVPVLSTRYSLSSLGLRVSKAWRPWYHENEVSGWVEEYEGLTFATFRGAGHAVPCFKPSSSLAFFSSFLRGQSPPSTK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120877g00015 515 Gene3D alpha/beta hydrolase 70 329 IPR029058 -
Stsc120877g00015 515 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 76 495 IPR001563 GO:0004185|GO:0006508
Stsc120877g00015 515 MobiDBLite consensus disorder prediction 54 78 - -
Stsc120877g00015 515 Gene3D - 367 403 - -
Stsc120877g00015 515 Gene3D - 414 508 - -
Stsc120877g00015 515 MobiDBLite consensus disorder prediction 54 76 - -
Stsc120877g00015 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 168 IPR001563 GO:0004185|GO:0006508
Stsc120877g00015 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 179 IPR001563 GO:0004185|GO:0006508
Stsc120877g00015 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Stsc120877g00015 515 PRINTS Carboxypeptidase C serine protease (S10) family signature 478 491 IPR001563 GO:0004185|GO:0006508
Stsc120877g00015 515 Pfam Serine carboxypeptidase 81 508 IPR001563 GO:0004185|GO:0006508
Stsc120877g00015 515 FunFam Carboxypeptidase 414 508 - -
Stsc120877g00015 515 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Stsc120877g00015 515 SUPERFAMILY alpha/beta-Hydrolases 72 510 IPR029058 -
Stsc120877g00015 515 FunFam Carboxypeptidase 70 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120877g00015 Stsc-Chr120877 93581 96354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120877g00015 372 509 Calmodulin-binding Proteins AT2G22960 32.374 1.77e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120877g00015 K16297 - gmx:100793427 816.224