Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120877g00014 ATGATCATGGTGGATAATAGCACAGATTCATCATCAGGAGGTCATCATCAACATCAACAACACCCTCACCTTCCACCAGGGTTTCGATTCCACCCAACAGACGAAGAACTCGTCGTTCACTACCTTAAAAAGAAAGCTTCTTCTTCACCACTCCCTGTCGCCATCATCGCCGACGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGGGATCAAGAATGGTACTTTTTTAGCCCCCGGGATAGGAAGTACCCGAATGGAGCACGGCCAAACAGGGCTGCTACTTCTGGGTATTGGAAAGCCACTGGCACTGATAAGCCTATTCTTTCTTCTGATGGCAACAAGCTCAAAGTTGGAGTCAAGAAAGCTCTTGTCTTTTATGGTGGCAAGCCCCCTAAAGGTGTCAAAACCAATTGGATTATGCATGAGTATAGGCTTGCTGATAATAATAATAATAATTCCTCCTTCAATGCTTCTTCTAATTCTTCATCATCCAATAAGCCTCCTTCTATCCCTCTTGATCCTCTCAAGAAGACTTCTCTCAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAGAGTAACAGCAGTAGTAGCAGCCTTCCAAGGCCAGCGTTTTTGATGGATCATCATCAAGAGAAGGATCTAATTTCCATGGACAGCACCATGGTTCCAACCATGTCAATATCCAAACCAAGAACCACAACAACAACAGGGAATTGTTATGGACCCATGGCACTTGAAAACGATGACAACTTCTTCGATGGTATTTTGGCTTCAACAACCGATCATCACACCATGCAAAATGGGTCTCCAGGGTCGTCATCTTCAAGCAAGAGGTTCCATGGTGGTCTTAACAATGGAAGCAACACCACAATTCACGAAGAGAACACCTCCTTCGTCTCCCTTCTTAACCAGCTTCCTCATCATCAGAACGCAGCGTTTCACCCAAACTCCATTCTTGGCTCCGTGGGAGATGCTGTCTTGAGGCAACAATTTCAACTTCCTGGCTTAAATTGGAACTAA 1047 0.4499 MIMVDNSTDSSSGGHHQHQQHPHLPPGFRFHPTDEELVVHYLKKKASSSPLPVAIIADVDLYKFDPWELPSKAAFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGNKLKVGVKKALVFYGGKPPKGVKTNWIMHEYRLADNNNNNSSFNASSNSSSSNKPPSIPLDPLKKTSLRLDDWVLCRIYKKSNSSSSSLPRPAFLMDHHQEKDLISMDSTMVPTMSISKPRTTTTTGNCYGPMALENDDNFFDGILASTTDHHTMQNGSPGSSSSSKRFHGGLNNGSNTTIHEENTSFVSLLNQLPHHQNAAFHPNSILGSVGDAVLRQQFQLPGLNWN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120877g00014 348 FunFam NAC transcription factor 56 33 205 - -
Stsc120877g00014 348 Gene3D NAC domain 33 205 IPR036093 GO:0003677|GO:0006355
Stsc120877g00014 348 Pfam No apical meristem (NAM) protein 25 152 IPR003441 GO:0003677|GO:0006355
Stsc120877g00014 348 PANTHER NAC TRANSCRIPTION FACTOR 56 24 252 - -
Stsc120877g00014 348 MobiDBLite consensus disorder prediction 270 300 - -
Stsc120877g00014 348 MobiDBLite consensus disorder prediction 157 176 - -
Stsc120877g00014 348 MobiDBLite consensus disorder prediction 1 18 - -
Stsc120877g00014 348 MobiDBLite consensus disorder prediction 1 28 - -
Stsc120877g00014 348 MobiDBLite consensus disorder prediction 157 182 - -
Stsc120877g00014 348 SUPERFAMILY NAC domain 18 200 IPR036093 GO:0003677|GO:0006355
Stsc120877g00014 348 ProSiteProfiles NAC domain profile. 24 200 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120877g00014 Stsc-Chr120877 86142 88102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120877g00014 4 348 NAC Transcription Factor Family AT1G61110 52.909 1.95e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120877g00014 NAM 7.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120877g00014 - - gmx:100792372 395.971