Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120877g00012 ATGGCGAGTGGGACATTAAGTACCTCTGAATATCAGACACTGATGAAGTCAACAAGAGAAGGAAAACGAAACATGTTTATCAAAGCTAATCCACCTTTTGAAGATGTTACATATCAAACCAAAACAAGCAAAAGGGATTGCTTGTTTTGCAAGAAAGAGACTAGTTCTAATGAGGATGATAGCAGACTAATCTTGAAAGGGGTTAGTGGTTCTGTTTTGCCTGGTGAATTATTAGCCATTTTAGGTCCTTCTGGCAGTGGAAAAACAACTCTCATCAATGCATTGGGAGGAAGACTAAAGGGTGTCACAGAAGGAAGCATCACCTACAATGGCAAGCACCTCTCCAAATCCGTGAAGCGAAACCTTGGATTTGTTCCTCAACATGATCTCTTCTACTCTCACCTAACAGTTCTTGAGACATTAGTCTTCTCAGCTCTTCTTCGCCTGCCGAACAGCCTCTCCAAACGAGAGAAGATCGCGCACGCCTGCGCGGTTATGAGTGAACTGGACTTGAATCATTGTAAGGACACCATAATGGGAGGTCCACTCTTAAGAGGTGTATCAGGTGGAGAAAGGAAGAGGGTCAGCATAGGTCAAGAATTGTTGACTAATCCTAGTCTCTTGCTTGTTGATGAACCAACTTCAGGGCTTGATTCCACAACTGCTAGAAGAATTGTGGTAACTCTCTGTGATTTGGCTAAATCTGGAAGGACTGTGGTAATGACTATTCATCAACCTTCTAGCAAGCTGTTTTACATGTTTCAGAAGATTCTGCTGCTATCAGATGGTAACACCTTGTACTTTGGGAAAGGAGAACTTGTCATGAATTACTTCTACAGCATTGGTTATGCTCCTTCTGTAGCAATGAATCCTACAGATTTCTTACTTGATCTTGCAACCGGTATATATGGTGGAAATTTAGAAGAAGAAGGTGAAGCTACAAAACAAGTGTTAATATCAGCATTTGAAAGTAACCTTGCATCTCAAGTAAAAATGGAACTGAAAAGTTCCAAGGTAGAATTTCACAACATTTCAGGGGATGAGATGTTTAGCCAGTACTGCACAACCTGGTGGCAGCAATTTACTATATTAATAAGAAGAGGTTTTAAAGAAAGAAAGTATGAACAATTTTCAATTCTCGTAATCTGTAAGGTCTTGGCTGCATCAACCATTTCAGGCCTTGTTTGGTGGCATGCCGGAGCTAATCAAATGAAAGATCTGGTGGGACTGCTTTTCTACTACACACAATTTGGTGCATACTTCCCACTCATAATATCAATCTTCATTTTCCCTTCTGATCATGAAATGCTAATGAAGGAAAAATCATGCTACATGTATAGGCTCTCAAGTTATGTGATGGCAAACAGTATGATTGAACTTCCAGTAGTGCTATCCATGCCAACCATTTTTGTCACCATTACTTACTGGATGGTAGGGCTAAAACCCAATCCCTTGAGTTTCTTCCAAACTCTAGCTATTGTTCTTCTCTATGCTTTGGTGTCACAGGGTATTGGTCTTGCCATTGGTGCAATTGTGGTGAAAAATCAGAAGTTGGCTACCACAGTTGGATCGGTACTCATGGGTTTATATATGTTTAGCAATGGCTTCCTTGTTCACCATATCCCAAGTTTCATTTCATGGATTAAACACATATCTCATAGCTATTATGGTTATAAGCTATTGTTGGGGTCACAGTTTAGTAGCATCATTAGCACTCACCCTTGTGGCCAAAATAATAATCATAATGTTACATGCTTTGGTAGGGAATATGATGTGATTAAGCATGTTGGGATTGATCACCAAGTTTTCTCTGTTTTTGCCTTGGTGGCAATGGTTGTAGTGTACAGAATTATTGCCTATTTTGCCCTTATTATTGTTGTAAAACATAGCTAG 1893 0.3988 MASGTLSTSEYQTLMKSTREGKRNMFIKANPPFEDVTYQTKTSKRDCLFCKKETSSNEDDSRLILKGVSGSVLPGELLAILGPSGSGKTTLINALGGRLKGVTEGSITYNGKHLSKSVKRNLGFVPQHDLFYSHLTVLETLVFSALLRLPNSLSKREKIAHACAVMSELDLNHCKDTIMGGPLLRGVSGGERKRVSIGQELLTNPSLLLVDEPTSGLDSTTARRIVVTLCDLAKSGRTVVMTIHQPSSKLFYMFQKILLLSDGNTLYFGKGELVMNYFYSIGYAPSVAMNPTDFLLDLATGIYGGNLEEEGEATKQVLISAFESNLASQVKMELKSSKVEFHNISGDEMFSQYCTTWWQQFTILIRRGFKERKYEQFSILVICKVLAASTISGLVWWHAGANQMKDLVGLLFYYTQFGAYFPLIISIFIFPSDHEMLMKEKSCYMYRLSSYVMANSMIELPVVLSMPTIFVTITYWMVGLKPNPLSFFQTLAIVLLYALVSQGIGLAIGAIVVKNQKLATTVGSVLMGLYMFSNGFLVHHIPSFISWIKHISHSYYGYKLLLGSQFSSIISTHPCGQNNNHNVTCFGREYDVIKHVGIDHQVFSVFALVAMVVVYRIIAYFALIIVVKHS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120877g00012 630 SMART AAA_5 74 264 IPR003593 GO:0016887
Stsc120877g00012 630 Pfam ABC-2 type transporter 244 336 IPR043926 GO:0140359
Stsc120877g00012 630 Pfam ABC transporter 65 215 IPR003439 GO:0005524
Stsc120877g00012 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 287 IPR003439 GO:0005524
Stsc120877g00012 630 Pfam ABC-2 type transporter 359 566 IPR013525 GO:0016020|GO:0140359
Stsc120877g00012 630 Gene3D - 52 280 IPR027417 -
Stsc120877g00012 630 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 619 - -
Stsc120877g00012 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 278 IPR027417 -
Stsc120877g00012 630 FunFam ABC transporter G family member 22 51 281 - -
Stsc120877g00012 630 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120877g00012 Stsc-Chr120877 69590 71766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120877g00012 64 248 Calmodulin-binding Proteins AT2G36910 28.796 5.65e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120877g00012 K05681 - gmx:100800295 805.438