Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120877g00001 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGGAGTAGTAGTGGACATGATTGGAACCAAGCCTTATTGGAATCACAGAACTTGGAGCTTCCAATTCCAAATAAGATGAAGAAACAACAACAACAACAGAATCAATCATCATCATCAGCAGCGGCAGCAGCAGAGCCATTGAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTCTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCTATTTATGCAGAGCTTGCAAGAGGCACTGGACCAAAGGTGGAACTCTCCGCAATGTTCCTGTTGGTGGTGGAAGAAAGAACAAAAGGGCCAAAAAGTCAACCACCACCAACTCTACTTGCACCACAAGCATCAGAATTCAACCTCCTTCTCTTGCAATAATGGATGATCACAAAAACTTATTAGCTTCTCCTTCTGCTTCTTCTTCTTCTCTCTACCAAGGTCTGATTCGTCCACCCCCTTTCCTACTACATCAGAATCTGATGAACAATATTATTACCAGAGGCATAAGATCATCAGAAAGTAAAGGCTATGGTATTGGTATTGGTACTGATAATAATAATAGCAATGGGATTTTTCTTGGTTCATCAGCTTTGTCTGTTCTTCCTCATCAGAATCAAAGCTTGCTTTTTCCCTTCTCAACAGCAACAAGCTCTAATTTTGACACAAACCCATCTTTAGTTTCAGTTTCAACCTCTTTGCAATCCACCACCAATGTTTATAATAACTGTGGTGAAGAGTTTAAAGCAATAGAGGAGGAACCAACAACCATGCACAGCATAATGGCTACCACCACTACTTGTTCTACACAGCCATGGGAGATACCAGCAGCAACAACAATGGAAATGTCAAACAACTATAATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTGCTGATAATCCAAACAATAATCATCCTTGGGAGGATTCCCATGATATCAAACCCTGA 972 0.4105 MGLSSKQVSRSSSGHDWNQALLESQNLELPIPNKMKKQQQQQNQSSSSAAAAAEPLKCPRCESTNTKFCYYNNYNKSQPRYLCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTTNSTCTTSIRIQPPSLAIMDDHKNLLASPSASSSSLYQGLIRPPPFLLHQNLMNNIITRGIRSSESKGYGIGIGTDNNNSNGIFLGSSALSVLPHQNQSLLFPFSTATSSNFDTNPSLVSVSTSLQSTTNVYNNCGEEFKAIEEEPTTMHSIMATTTTCSTQPWEIPAATTMEMSNNYNWGWEDIDSLVSADNPNNNHPWEDSHDIKP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120877g00001 323 Pfam Dof domain, zinc finger 55 109 IPR003851 GO:0003677|GO:0006355
Stsc120877g00001 323 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Stsc120877g00001 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 239 IPR045174 GO:0003700|GO:0006355
Stsc120877g00001 323 MobiDBLite consensus disorder prediction 97 121 - -
Stsc120877g00001 323 MobiDBLite consensus disorder prediction 1 51 - -
Stsc120877g00001 323 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Stsc120877g00001 323 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120877g00001 Stsc-Chr120877 1133 3164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120877g00001 54 189 C2C2-Dof Transcription Factor Family AT5G66940 42.657 1.29e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc120877g00001 zf-Dof 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120877g00001 - - gmx:100791855 293.508