Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120876g00021 ATGGCGGTTTCTCCGACGGTGGCCGCACCTCCGGCGTCTCTTTACGTCGGTGACCTCCACCCGGACGTCTCCGACGGACAGCTCTCGGAGGCATTCTCGGAGTTCAAGAGCCTCGCCTCTGTTCGCGTTTGCAGGGACTCCTCCACCGGCAGGTCACTCGGTTATGGCTACGTTAACTTCGTCTCTCCGGAAGACGCGAATCAAGCGATCGAGCTGAAGAATCATTCCATGCTGAACGGGAAAGCGATTAGGGTCATGTGGTCGCGTCGTGATCCTGATGCAAGGAAGATTAACATTGGGAACGTGTTTGTTAAGAACTTGGCCGAATCTGTTGACAATGCGGGATTACAAAATTTATTTAAACAATTTGGCGAAATTTTGTCCTGCAAAGTTGTCACGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCTGAGGAACCTGCAAATGCTGCCATCGAGAAGCTGAATGGCGCTAAAATTGCTGATAAGCAAATTGATCGTATTGTGCCTGGCCCTGATGCAAGATATACAAATTTGTACATGAAAAATTTGGACCCAGAAATTACAGAAGCATATCTGGAGGAAGAGTTTTCTACTTATGGCAAAATTGTTAGCTTGGCTATTGCAAGGGATAGCAGTGGGGTGTCAAAGGGTTTTGCCTTTGTGAACTATGAAAACCCAGATGATGCTAAAAGGGCAATGGAAGCAATGAATGAAAAACAATTTGGTGCAAAGGTTCTGTATGTAGCTAGAGCACAGAAGAAGGCTGAACGGGAGCAGATTTTGCTTAACCAGTTTGAGGAAAAACGTAAGGAACAAGTCTTGAAATACAAGGGATCAAATGTTTATGTGAAGAACATTGATGACAATGTTAGCGATGATGAATTGCGAGACCATTTTAGTGCATGTGGCACAATAACTTCTGCAAAAATTATGCGAGATGATAAAGGGACAAGCAAAGGCTTTGGTTTTGTCTGCTTCTCAACTCCTGAGGAGGCCAATAAAGCTGTGAATACTTTCCATGGAATTATGTTTCATAGGAAACCACTATATGTTGCTCTTGCTCAAAAGAAAGCAGATAGACAGGCACAGTTGCAGCTCCAGTATGCGCAGCAACTAACAGGTCTAGGTGGACCTTCAACTGCCATTATCCCTGCTGGATATCCTCCCTACTACTATGCAGCTACTGGTGTTGTTTCACATGTTCCTACTAGAGCTGGGCTGATGTATCAACCTATAACATTGAGGACAGGATGGAGGGCTAGTGGCTTTGCACCTCCTGCTAGACCATTGCCACAAACACCAGTTCCTGTTGTTACAAACAATAACAGGCAGCATAGGACAAACAGGGGAAGGATGAATGGCAATAACATTTCACAGGGAAATGTTCACTCTGTTACTCATATGCCTCAATCACAGCAGACTACGCCCTCTTCAAGAGAGTCAACTAATCAGCAGCGTGCCAGACAGGCTAGGTACGTACCTAGTGCGCACCAACGTGGGACTGAGAAAGGATCTGGATCATCTGCTGGTTCCAATTCCGATGGAGGATCCCAGGGATCAGAAATGCTGCATAGCATGCTTGCTGCAGCTTCTCCTGAGCAGCAGAAACAAATGCTTGGCGAGCGTATTTACGAGCATGTCAGCAAACTTCAGCCTTTCATAGCAGCGAAGATTACAGGGATGCTTCTGGAGATGGACAATGCAGAATTGCTGCTTCTCCTGGAATCACCGGAATCTCTTTCTTCTAAGGTGGAAGAAGCCGTGGAAGTGCTTAAGAACTCTAATACCAAAGTTTCTGGCCAGGATGTATTTCATTCAAAGTACTTTACAGCTGAGGTTGCAGTGAACTGA 1869 0.4564 MAVSPTVAAPPASLYVGDLHPDVSDGQLSEAFSEFKSLASVRVCRDSSTGRSLGYGYVNFVSPEDANQAIELKNHSMLNGKAIRVMWSRRDPDARKINIGNVFVKNLAESVDNAGLQNLFKQFGEILSCKVVTSEDGKSKGYGFVQFESEEPANAAIEKLNGAKIADKQIDRIVPGPDARYTNLYMKNLDPEITEAYLEEEFSTYGKIVSLAIARDSSGVSKGFAFVNYENPDDAKRAMEAMNEKQFGAKVLYVARAQKKAEREQILLNQFEEKRKEQVLKYKGSNVYVKNIDDNVSDDELRDHFSACGTITSAKIMRDDKGTSKGFGFVCFSTPEEANKAVNTFHGIMFHRKPLYVALAQKKADRQAQLQLQYAQQLTGLGGPSTAIIPAGYPPYYYAATGVVSHVPTRAGLMYQPITLRTGWRASGFAPPARPLPQTPVPVVTNNNRQHRTNRGRMNGNNISQGNVHSVTHMPQSQQTTPSSRESTNQQRARQARYVPSAHQRGTEKGSGSSAGSNSDGGSQGSEMLHSMLAAASPEQQKQMLGERIYEHVSKLQPFIAAKITGMLLEMDNAELLLLLESPESLSSKVEEAVEVLKNSNTKVSGQDVFHSKYFTAEVAVN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120876g00021 622 SUPERFAMILY RNA-binding domain, RBD 175 264 IPR035979 GO:0003676
Stsc120876g00021 622 MobiDBLite consensus disorder prediction 506 526 - -
Stsc120876g00021 622 SUPERFAMILY RNA-binding domain, RBD 11 170 IPR035979 GO:0003676
Stsc120876g00021 622 Gene3D - 523 616 - -
Stsc120876g00021 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 170 IPR000504 GO:0003723
Stsc120876g00021 622 SMART rrm1_1 286 358 IPR000504 GO:0003723
Stsc120876g00021 622 SMART rrm1_1 13 86 IPR000504 GO:0003723
Stsc120876g00021 622 SMART rrm1_1 101 173 IPR000504 GO:0003723
Stsc120876g00021 622 SMART rrm1_1 183 255 IPR000504 GO:0003723
Stsc120876g00021 622 Gene3D - 174 270 IPR012677 -
Stsc120876g00021 622 Gene3D - 271 373 IPR012677 -
Stsc120876g00021 622 PANTHER RNA BINDING PROTEIN 284 486 - -
Stsc120876g00021 622 FunFam Polyadenylate-binding protein 523 609 - -
Stsc120876g00021 622 SMART rrm2_1 183 255 IPR003954 GO:0003676
Stsc120876g00021 622 SMART rrm2_1 101 173 IPR003954 GO:0003676
Stsc120876g00021 622 SMART rrm2_1 286 358 IPR003954 GO:0003676
Stsc120876g00021 622 SMART rrm2_1 13 86 IPR003954 GO:0003676
Stsc120876g00021 622 FunFam Polyadenylate-binding protein 4 95 - -
Stsc120876g00021 622 Gene3D - 102 173 IPR012677 -
Stsc120876g00021 622 SUPERFAMILY PABC (PABP) domain 467 608 IPR036053 GO:0003723
Stsc120876g00021 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Stsc120876g00021 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Stsc120876g00021 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 355 IPR000504 GO:0003723
Stsc120876g00021 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 252 IPR000504 GO:0003723
Stsc120876g00021 622 FunFam Polyadenylate-binding protein 268 376 - -
Stsc120876g00021 622 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 598 IPR006515 GO:0003723
Stsc120876g00021 622 Coils Coil 254 274 - -
Stsc120876g00021 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Stsc120876g00021 622 SMART poly_2 537 600 IPR002004 GO:0003723
Stsc120876g00021 622 CDD RRM4_I_PABPs 284 362 - -
Stsc120876g00021 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Stsc120876g00021 622 SUPERFAMILY RNA-binding domain, RBD 282 377 IPR035979 GO:0003676
Stsc120876g00021 622 Gene3D - 4 101 IPR012677 -
Stsc120876g00021 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 525 602 IPR002004 GO:0003723
Stsc120876g00021 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 362 IPR000504 GO:0003723
Stsc120876g00021 622 Pfam Poly-adenylate binding protein, unique domain 532 597 IPR002004 GO:0003723
Stsc120876g00021 622 FunFam Poly(A) binding protein cytoplasmic 1 like 96 173 - -
Stsc120876g00021 622 FunFam Polyadenylate-binding protein 174 267 - -
Stsc120876g00021 622 MobiDBLite consensus disorder prediction 440 497 - -
Stsc120876g00021 622 MobiDBLite consensus disorder prediction 429 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120876g00021 Stsc-Chr120876 140183 143509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120876g00021 12 620 Eukaryotic Initiation Factors Gene Family AT2G36660 51.125 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120876g00021 K13126 - gmx:100779547 891.338