Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120876g00020 ATGGCTGAAACAAAACTGAAACCAGGCTCCAATCTTGGCTATGCATTTCTTCTTCTTCTTACTCTTCTTTTCCTTTGTAGTCACACTTGTTCTTCACAAAAGACTTGTCCACTCTGTGGCTCTGTGCAAGTTCCTTATCCATTAAGCACACAATCGAGTTGTGGCGATCCGTATTACAAGCTACGCTGTGATCAGCAATCTGAAAAGCTCTACTTTGACACACTCAACGGAAGTTCCTATGTAGTACTAAAAATCATGTCCTCAATTCAAAGCATGGTGGTTCAGCCAGCGCCGTGGCTATCTGGCACATCATGTGTCACACAAGACATGCCAGTTAGCAACGGTATCTGGCTGAACCAATCACTTCCTTTCAACATAACTTCTTCAAACACAATTTTCCTCTTCAACTGCTCGCCTCGCCTCTTGGTCTCTCCCCTGAACTGCTCTGCCTCCAGCATATGCCACCAATACTTGGAGAGCTCCGGCCGCGTCGGAAAATCTCAAGCACTTGATTGTGCAAGTGGAATCCACCCTTGTTGTACTTTTGTTGCTGGTGGAAACCCTTCAGCCTACAAGATTCGCCTCCACAATTCCGGCTGCAAAGCTTTCAGAAGCATCCTCCATTTGGATGAGGATAAGCCTCCAAATCAATGGGAAGAAGGCCTAGAAATTCAATGGACTCCACCACCCGAACCGGTATGCAAAACACAAGAAGATTGCTCCGGAGACTCCAAGTGTTCTCCGGGGAAAAATGGACTACTTCGCTGTCTTTGTAACAAGGGACACCAATGGGACCCTTATGCGGCAACATGCTTAAGGCACAACAGAAACTCCAAATTGAAAACCAGCATAGTAATCTCAATTGTTGTTACCATCTTTTTCTCTCTAGCTATAGTTCTTGTTATGATCACAAAATCCTGCAGAATCTATAGCTATATGGAGAAGAATAAGAAGAAGAAGGTCAAGGAAGCAGAGAATGTGTTGAAATCAAGCACTGGTGAGAAGTCTTATAGAATGTTCCAGCTGAAAGAAGTGAAGAAGGCAACAAATTCTTTCTCCAAAGACAGGATTCTAGGGAGTGGTGGATTTGGAGAAGTTTATAAAGGTGAACTCCAAGATGGAACAATGGTGGCTGTGAAGAAAGCAAGGGTTGGAAACCTAAAAAGCACGCAACAAGTTCTCAATGAAGTTGCAATTCTCTCACAGGTGAATCACAAGAACCTGGTGAGACTCTTGGGTTGTTGTGTGGAAGAATCAGAGCAGCCTTTGATGATCTACGAGTACATCTCGAATGGAACGCTGTATGATCATCTTCATGGAAGGTATCAAAGCTTCTTGGATTGGGAAACAAGGCTGAAAGTGGCGCTTCAGACGGCGGAGGCCTTGGCCTACTTGCATTCGGCGGCGCACACTCCGATCTACCATAGGGATGTTAAGTCCACTAACATTCTTCTGGACGATGAATTCAATGCTAAGGTATCCGATTTCGGGCTGTCGAGGCTGGCGAGCCCCGGGCTGAGCCATGTTTCAACGTGTGCTCAAGGAACTGTTGGATACTTAGATCCGGAATACTACAGAAACTATCAGTTAACGGATAAGAGTGATGTTTATAGCTATGGAGTGGTGTTGTTGGAGCTTTTAAGTTCTGAGAAAGCTATTGATTTTAACAGAGATCCAGATTGTGTGAACCTGGTGATTCATGTGAGCCAGCATGCAAGCAATGGAACACTGCTGATGGAGGTTGTGGATCAGAGGCTTGTTTGCGAGGAGAAGTTTGGTGAGAGCATAAGAATGTTCTCGGAGCTTGCACTTGATTGCTTGAGGGAGAAGAAAGGTGAAAGGCCTTGCATGAAGGATATTGTTCAGCGCCTAATTACTATACTGAAGGTTATGGATCAAGAGAGGAATAATACTGTTAATGTTAATGTTAATGTTTTAGTTGAGAATCATGAATAA 1956 0.4422 MAETKLKPGSNLGYAFLLLLTLLFLCSHTCSSQKTCPLCGSVQVPYPLSTQSSCGDPYYKLRCDQQSEKLYFDTLNGSSYVVLKIMSSIQSMVVQPAPWLSGTSCVTQDMPVSNGIWLNQSLPFNITSSNTIFLFNCSPRLLVSPLNCSASSICHQYLESSGRVGKSQALDCASGIHPCCTFVAGGNPSAYKIRLHNSGCKAFRSILHLDEDKPPNQWEEGLEIQWTPPPEPVCKTQEDCSGDSKCSPGKNGLLRCLCNKGHQWDPYAATCLRHNRNSKLKTSIVISIVVTIFFSLAIVLVMITKSCRIYSYMEKNKKKKVKEAENVLKSSTGEKSYRMFQLKEVKKATNSFSKDRILGSGGFGEVYKGELQDGTMVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVEESEQPLMIYEYISNGTLYDHLHGRYQSFLDWETRLKVALQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLASPGLSHVSTCAQGTVGYLDPEYYRNYQLTDKSDVYSYGVVLLELLSSEKAIDFNRDPDCVNLVIHVSQHASNGTLLMEVVDQRLVCEEKFGESIRMFSELALDCLREKKGERPCMKDIVQRLITILKVMDQERNNTVNVNVNVLVENHE 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120876g00020 651 SMART serkin_6 352 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120876g00020 651 Gene3D Phosphorylase Kinase; domain 1 321 428 - -
Stsc120876g00020 651 ProSiteProfiles Protein kinase domain profile. 352 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120876g00020 651 FunFam Wall-associated receptor kinase-like 20 429 637 - -
Stsc120876g00020 651 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 325 428 - -
Stsc120876g00020 651 Pfam Wall-associated receptor kinase galacturonan-binding 38 94 IPR025287 GO:0030247
Stsc120876g00020 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Stsc120876g00020 651 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 635 IPR044652 GO:0004672
Stsc120876g00020 651 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Stsc120876g00020 651 SUPERFAMILY Protein kinase-like (PK-like) 328 624 IPR011009 -
Stsc120876g00020 651 CDD STKc_IRAK 358 624 - -
Stsc120876g00020 651 Pfam Protein tyrosine and serine/threonine kinase 354 624 IPR001245 GO:0004672|GO:0006468
Stsc120876g00020 651 Gene3D Transferase(Phosphotransferase) domain 1 429 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120876g00020 Stsc-Chr120876 132827 134931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120876g00020 14 638 Receptor kinase-like Gene Family AT5G02070 45.852 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc120876g00020 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120876g00020 - - gmx:100804678 964.911