Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120876g00013 ATGGAGTGGAATGAAAGCACAAGATCCTTTGTTCCTCGTGCTGAGCCTTCACTAAGCTTCTTTTACAACTATAGCAGTAGCAGCAACAGCAACCCATCATACCCAGGAAGCGAAGGGAAAGAAGCAGCATTGGTGGAGACACCACAGGAGTTGCTTCATGCAATGGAGGAAATGAAGTACGCGGCGAGCCAGCGGGAGAAGAAGAAGAGATTAACAAGCAGCCAGATTGAGTCATTGGAGAGAAGCTTCCAGGAGGAGATAAAGTTGGACACTGACAGGAAGATGAAGCTTTCCAGGGAGCTTGGCCTTCAGCCTCGCCAAATCGCTGTTTGGTTCCAGAATAGGCGAACAAGGTGGAAGGCCAAGCAACTTGAACACTTGTACTTTGCCCTTAAACAAGAATTTGATCTCATCTCCAACGAGAAGCACAAGCTTCAAGAAGAGGTTATGAGGTTGAAGGCAAGGATAAGAGAGCAAGCATATAGAACACATGTATCTGGTGTTTATACAGAAATGTGTGGGGCAGAAACAGTAGAAAGCACGTCAGAGATGTTGCATGGATCAAAGGGAATGATTACTAGTAGTAATAGTAATCAGCAGATTATTGCAGATGGCTACTGCTGTGTCCCTGTGGAGGATCATCATCAACAAAACAATGTTCCTCTGCCTAACTGGTCTGCTGCGCCTTATTGTCCCTAA 699 0.4578 MEWNESTRSFVPRAEPSLSFFYNYSSSSNSNPSYPGSEGKEAALVETPQELLHAMEEMKYAASQREKKKRLTSSQIESLERSFQEEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYFALKQEFDLISNEKHKLQEEVMRLKARIREQAYRTHVSGVYTEMCGAETVESTSEMLHGSKGMITSSNSNQQIIADGYCCVPVEDHHQQNNVPLPNWSAAPYCP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120876g00013 232 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Stsc120876g00013 232 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Stsc120876g00013 232 SMART HOX_1 64 126 IPR001356 GO:0003677
Stsc120876g00013 232 Pfam Homeodomain 65 120 IPR001356 GO:0003677
Stsc120876g00013 232 FunFam Putative homeobox-leucine zipper protein ATHB-51 64 127 - -
Stsc120876g00013 232 Gene3D - 23 123 - -
Stsc120876g00013 232 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Stsc120876g00013 232 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Stsc120876g00013 232 CDD homeodomain 65 123 IPR001356 GO:0003677
Stsc120876g00013 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 182 IPR045224 GO:0003700
Stsc120876g00013 232 Coils Coil 135 162 - -
Stsc120876g00013 232 SUPERFAMILY Homeodomain-like 56 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120876g00013 Stsc-Chr120876 93295 94473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120876g00013 9 160 Homeobox Transcription Factor Family AT2G36610 49.398 1.33e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc120876g00013 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120876g00013 - - ahf:112757138 310.842