Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120876g00011 ATGGAAGCCAATGGAATAGGTGGTGGTGGAATTTACACTAGCATAAACACTTCATTGCTAGGATTAGAGAATAACAACAACACACACAACAATTTGCAGCATCAAATGGCTTATCCTACACATCATGACACTGAATCACACCCTTCACAACAGCAGCAAGGAGTGAAACATGCTGGGTACCCATATTCTTCCAAGAAGCCACAGAGCAGCAACTTCAGTGATGAAGATGAACCTGGTGAAAGCTCTGGTGACCCAAAGAGGAAGGCCTCTCCATGGCACAGGATGAAGTGGACCGACGCCATGGTTAGGCTCTTGATAATGGCGGTTTATTACATCGGAGACGAAGTTGGTTCGGAAGGTGTAGGAGGAGGAGGAGGTGGTGATCCAAGTGGGAAGAAGAAGAACGGTGGGTTGCTTCAGAAGAAAGGGAAGTGGAAATCAGTGTCTAGGGCTATGATGGAGAAAGGGTTTTATGTTTCTCCTCAGCAATGTGAAGACAAATTCAATGACTTGAACAAGAGGTACAAGAGGGTCAACGACATTCTTGGAAGAGGAACAGCTTGTAGGGTCGTTGAGAATCAGAGCTTGTTGGAAACCATGGATTTGTCCCCAAAGATGAAAGAAGAGGTCAGGAAGCTTCTCAATTCTAAGCACCTTTTCTTCAGGGAAATGTGTGCTTATCATAACAGTTGCGCCCACGGTGGTGGTGGTGGTGGTGGTGGTGGTAATGCTCCCCACTCGGCTGAGGTGGTGGGAACAGAACAACCGTTACAGGTTCAACAACCGCAACCACAACAGCATCATCCGGCACAGCAGAGATGCTTCCATTCATCGGTGAATGGAGTTGGGATGCTGAAAGATGACTATGAAGACGAGGAGGAAGATGAATCTGAAGACTCTTCAGATGAAGATGAAGAGGAATCAGGAGAAGGTGGTGGATCAAGGGGTCAAGTAGAGGATGAAGAGAATGATGGAGTGAGGTCAAGGAAGAGACAAAGGAACAACAAGGGAGGGTTCTGTGTGACGTCATCATCAACATCAGCAGCAGCAGCAGCACAATTGAACAACGAGGTTGCTGGGGTGCTGCAAGATGGAGGGAAGAATCCATGGGAGAAGAAGCAGTGGATGAAGAAGAGGGTGCTGCAGCTGGAGGAGCAGCAGGTGAGGTACCAAGTGGAGGCCTTTGAGCTTGAGAAGCAGAGGCTCAAGTGGGTGAGGTTCAGTTCCAAGAAGGAGAGGGACATGGAGAGGGACAAGCTTGAGAATGAGAGGAGGAGGTTGGAGAATGAGAGGTTGCTCTTGATTCTTCGCCAGAAGGAGCTTGAATTCATTAGTCTTCATCACCTCAAGCACCAGCACCACCAGCAACAACAACAACAACAGCAACATTCTTCTACTTAG 1401 0.4797 MEANGIGGGGIYTSINTSLLGLENNNNTHNNLQHQMAYPTHHDTESHPSQQQQGVKHAGYPYSSKKPQSSNFSDEDEPGESSGDPKRKASPWHRMKWTDAMVRLLIMAVYYIGDEVGSEGVGGGGGGDPSGKKKNGGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTACRVVENQSLLETMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCAHGGGGGGGGGNAPHSAEVVGTEQPLQVQQPQPQQHHPAQQRCFHSSVNGVGMLKDDYEDEEEDESEDSSDEDEEESGEGGGSRGQVEDEENDGVRSRKRQRNNKGGFCVTSSSTSAAAAAQLNNEVAGVLQDGGKNPWEKKQWMKKRVLQLEEQQVRYQVEAFELEKQRLKWVRFSSKKERDMERDKLENERRRLENERLLLILRQKELEFISLHHLKHQHHQQQQQQQQHSST 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 288 309 - -
Stsc120876g00011 466 Coils Coil 410 437 - -
Stsc120876g00011 466 PANTHER F16F4.11 PROTEIN-RELATED 13 443 - -
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 39 90 - -
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 121 144 - -
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 39 69 - -
Stsc120876g00011 466 Pfam Myb/SANT-like DNA-binding domain 94 226 IPR044822 -
Stsc120876g00011 466 Coils Coil 380 400 - -
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 288 342 - -
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 310 331 - -
Stsc120876g00011 466 MobiDBLite consensus disorder prediction 253 272 - -
Stsc120876g00011 466 Gene3D - 97 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120876g00011 Stsc-Chr120876 73699 75895 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc120876g00011 Myb_DNA-bind_4 1.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120876g00011 - - aip:107648773 613.609