Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120876g00007 ATGAACAACCTTCCTCTTCTTATTCTTACCTTTGCATTGGCCTTGCCGTTTATATGCTTCAAATGCGAGAGTGCACCACAAAATGATACACACGCACTCACCCAATTCCGCCTCCAAACCGACATACACGCCTCCCTCCTAACAAACTGGACCGGCGCCGATGCTTGCGCCTCCACCGCCGCTTGGCGCGGCGTCGAGTGCTCCCCAAACGGCAGAGTAGTGGCACTCTCCCTCCCTTCCCTCAATCTCCGAGGCCCCATCCATTCCCTCTCATCACTCACCTACCTCCGATTCCTTGATCTCCACGATAATCGCCTAAACGGCACCGTTTCCGCTCTTTGCAACTGTACCGCCCTTGAACTCCTCTACCTCTCCGGCAATGACTTCTCCGGCGAGGTTCCTCCTGAGATTTCGTCCCTCAAGCTCCTCGTGAGGCTTGACATCTCCGATAACAACCTCCGAGGATCGGTTCCCAAGGAAATTTCACGTTTAACTCACCTCCTCACGCTCCGCCTCCAGAACAATGCTCTTTCCGGCGAAGTCCCCGATTTCTCTTCTTCCCTCGTTAACCTCAAGGAGCTTAACATGACCAATAACGAACTCTCCGGACACTTACCGAATTCCATGCTCAACAGGTTCGGTATTGCAAGCTTCGCTGGGAATGGCGCACTTTGTGGTGATTCACCATTGCCAAACTGTTCCTCCGCCACCGAAACCACTCCTTCCTCATCTTCTGATAACCAAACCGTCCCTTCAAACCCGAGCGCCATACCGAAATCGAGTAGCGTAATCGCAGCTCCAAAGAACACGCCATCTCGTCGGAAAGGTTTAAGTCCCGGGGTTATAGTGGCAATTGTGGTGGCGGTTTGCGTGGTGTTTCTTGTGGTGGTCTCTTTCGCCGTGGCGCACTGCTGCGCCGGTGGGAGAACCTCCAACTCATTGGTTGGGAGTGAATACGGGAAGAGGAAGAGTGAGAGCAGCTACGGGAGCGAGAAGAAGGCGTACGTTAGTGGTGGCGGTGGCGCAGAAAGGGACAGTGATGGAACGGTGGACACTGAGAGGAGCAGGCTGGTGTTCTTTGATAGGAGGAGCCAGTTTGAGCTGGAGGATCTGCTTCGCGCATCAGCGGAGATGCTTGGGAAGGGGAGCTTGGGGACGGTGTATAGGGCGGTGTTGGATGACGGGTGCACTGTGGCGGTGAAGAGACTGAAGGATGCGAACCCATGTGAGAGGAGCGAGTTTGAGCAGTACATGGATGTTGTGGGAAAGATGAAACACCCAAACATTGTGAGGCTGAGAGCGTTTTATTATGCCAAGGAAGAAAAGCTTCTTGTCTATGATTATCTCCCCAATGGAAGCTTGCATACTCTTCTTCATGGGAACCGTGGAGGAGGAAGAATCCCATTAGATTGGACAACAAGAATAAGCCTGGTGTTAGGAGCAGCCAGAGGAGTAGCTCGCATTCATGCAGAGTACAGTGCTGCCAAGATCCCTCACGGCAACATCAAATCTTCCAACGTCCTTCTCGACAAGAACGGCGTCGCATGCATCTCCGACTTCGGCCTCTCCCTCCTCCTCAACCCCGTCCACGCCATAGCCAGGATGGGCGGTTACAAAGCACCTGAGCAATCAGACCACAAGAAACTCTCCCAGCAAGCTGATGTCTACAGCTTCGGCGTCTTGATCTTGGAGGTTCTAACCGGGAAACCACCGTCTCAGACTCCTTCATTGCCAAGGCCTCGGTTGGAGTTGGAGGAACAACACTTGGATCTTCCCAAATGGGTTCGTTCCCTTGTGAAGGACGGTGAGGAGTGGAACCCGGAGGTGTTTGATCAGGAACTTCTGAGGTACAAGAACATTGAGGATGAGCTTCTCGCCATGATGAATGTTGGGTTAGTTTGTACCGATTTGGATCCGGAGAAGAGGCCAACTATGTTGGAGGTTGTGAAGATGGTTGAGGATATCAGGGTGGAACAGTCCCCTCTTGTGGAGGATTTTGATGAGTCTCGCAACTCGCTCTCGCCTTCCATTCCCACCACAGAAGATGGCATGGCCTAG 2058 0.5296 MNNLPLLILTFALALPFICFKCESAPQNDTHALTQFRLQTDIHASLLTNWTGADACASTAAWRGVECSPNGRVVALSLPSLNLRGPIHSLSSLTYLRFLDLHDNRLNGTVSALCNCTALELLYLSGNDFSGEVPPEISSLKLLVRLDISDNNLRGSVPKEISRLTHLLTLRLQNNALSGEVPDFSSSLVNLKELNMTNNELSGHLPNSMLNRFGIASFAGNGALCGDSPLPNCSSATETTPSSSSDNQTVPSNPSAIPKSSSVIAAPKNTPSRRKGLSPGVIVAIVVAVCVVFLVVVSFAVAHCCAGGRTSNSLVGSEYGKRKSESSYGSEKKAYVSGGGGAERDSDGTVDTERSRLVFFDRRSQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCERSEFEQYMDVVGKMKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHTLLHGNRGGGRIPLDWTTRISLVLGAARGVARIHAEYSAAKIPHGNIKSSNVLLDKNGVACISDFGLSLLLNPVHAIARMGGYKAPEQSDHKKLSQQADVYSFGVLILEVLTGKPPSQTPSLPRPRLELEEQHLDLPKWVRSLVKDGEEWNPEVFDQELLRYKNIEDELLAMMNVGLVCTDLDPEKRPTMLEVVKMVEDIRVEQSPLVEDFDESRNSLSPSIPTTEDGMA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120876g00007 685 MobiDBLite consensus disorder prediction 233 276 - -
Stsc120876g00007 685 Gene3D Phosphorylase Kinase; domain 1 345 448 - -
Stsc120876g00007 685 ProSiteProfiles Protein kinase domain profile. 373 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120876g00007 685 FunFam pollen receptor-like kinase 1 343 448 - -
Stsc120876g00007 685 Pfam Protein kinase domain 377 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120876g00007 685 Gene3D Transferase(Phosphotransferase) domain 1 449 673 - -
Stsc120876g00007 685 MobiDBLite consensus disorder prediction 664 685 - -
Stsc120876g00007 685 FunFam Nuclear pore complex protein NUP107 26 183 - -
Stsc120876g00007 685 SUPERFAMILY L domain-like 27 211 - -
Stsc120876g00007 685 SUPERFAMILY Protein kinase-like (PK-like) 377 652 IPR011009 -
Stsc120876g00007 685 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 658 IPR046959 -
Stsc120876g00007 685 Gene3D Ribonuclease Inhibitor 28 142 IPR032675 -
Stsc120876g00007 685 Gene3D Ribonuclease Inhibitor 143 217 IPR032675 -
Stsc120876g00007 685 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Stsc120876g00007 685 MobiDBLite consensus disorder prediction 330 349 - -
Stsc120876g00007 685 CDD STKc_IRAK 379 655 - -
Stsc120876g00007 685 MobiDBLite consensus disorder prediction 233 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120876g00007 Stsc-Chr120876 51071 54440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120876g00007 27 681 Receptor kinase-like Gene Family AT2G36570 63.785 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120876g00007 Pkinase 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120876g00007 - - gmx:100808402 953.74