Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120876g00001 ATGGAGCCTGTTAAGGAGGGTGTGTTTTCCGGTCCAACCGGGAACACAAACTCCGGTTCACATGCCCAACCGGTAAGTACTCAGTTTCCACCCCACCAAGTGATGAACTTGAACGTTGGAAGCCTTGGAGGAGGACCACCACCACCACAACTGCCGCCACAACAACCACCACAGGCGCAACCACAAGCGCCACCAGGCACAGCGACAATGTCAACGGCAACAGGAACACCGGGAACAGGAACAACTGGTGGTGGTTCGGGGCAAGGGAGTTTGGAGTTGTTTGGGAAGAAGAAGAGAGGGAGGCCAAGAAAGTATGACTCAGAAGGGAACCTCAGGGTGCCAAGCCAACCACCACCGGGGTTCTCTCTCACTCCGGGTTCGGGTTCGGGTTCGGAGTTTTCAACAAAACGGGGTCGTGGCAGCAGTGCAAAGTCACATGCTTCTGGAAGCTGGAACCTTCTTGCTTCTTTGGGTTTGTTTGGAAGCACAACCGGTACTGATTTTACACCTCATGTCGTGACGGTTTATGCTGGAGAGGATGTTGCTGGAAAGATTTTCTCATTTGCACAGAAGGGTCCTAAGGGAATATGCATTCTTTCTGCAAATGGAGCTATATCTAAAGTTACCTTGCGACAACCCGGTTCTTGTGGTGGCCTATTGACATATGAGGGTCGATTTGAGCTTTTATCCTTGTCTGGGTCATTCACAGTCCCTGATAATGCTGCCACGATTCCTTCTAGTGGATTGAGTGTCTCACTGGCTGGCCCCGATGGTCGCGTGATAGGAGGGGGTGTTGCTGGTTTGTTGACAGCTGCTGGCCCAATCCAGATTGTAGTGGGGAGCTTCATTCCAAGTGGTCAAAAGCCCCCAAAAAGGAAATATAACCGTCAACCGGTAGCCTTCCATGCTGCTTCGGGTCCTACGGAGACAGTAGCAGCTGCAGGACCTATCTCACAATCAAATCCTGGTGGTGAAAATCCTCTGGGACATTCACCTCAGTTACCGGAACAAGGTCAGAGAGAGTCGGTCAGCGCATCAAGCGATAAACTGAACTTAGATGACTCCCTTAATGGTGATGATTGGAATGATACTGAAGATTTCTCAGATCATAGGCCATCCCCAGACATCAACATAACTTTGGCTGATGAGTAG 1152 0.5069 MEPVKEGVFSGPTGNTNSGSHAQPVSTQFPPHQVMNLNVGSLGGGPPPPQLPPQQPPQAQPQAPPGTATMSTATGTPGTGTTGGGSGQGSLELFGKKKRGRPRKYDSEGNLRVPSQPPPGFSLTPGSGSGSEFSTKRGRGSSAKSHASGSWNLLASLGLFGSTTGTDFTPHVVTVYAGEDVAGKIFSFAQKGPKGICILSANGAISKVTLRQPGSCGGLLTYEGRFELLSLSGSFTVPDNAATIPSSGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFIPSGQKPPKRKYNRQPVAFHAASGPTETVAAAGPISQSNPGGENPLGHSPQLPEQGQRESVSASSDKLNLDDSLNGDDWNDTEDFSDHRPSPDINITLADE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120876g00001 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 282 IPR005175 -
Stsc120876g00001 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 285 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 312 383 - -
Stsc120876g00001 383 CDD DUF296 169 282 IPR005175 -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 45 63 - -
Stsc120876g00001 383 ProSiteProfiles PPC domain profile profile. 165 309 IPR005175 -
Stsc120876g00001 383 Gene3D - 170 298 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 94 108 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 1 147 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 64 88 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 122 147 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 312 352 - -
Stsc120876g00001 383 MobiDBLite consensus disorder prediction 10 35 - -
Stsc120876g00001 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 52 345 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120876g00001 Stsc-Chr120876 1358 5207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120876g00001 80 292 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 51.835 1.64e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120876g00001 - - cave:132161869 347.821