Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120875g00017 ATGGCAAACCCATCCTCCTCTTCCTCCTCTCAATTCACCTATTCCTCCGATCCCTCTTACTTCCCCACTCCCTTCCACCTTCAACAACCCCCTTACGCCCCACCCCCTCGTCCCCCACCTCCCACCGTCGCCGCCGCCCCCGCCGCTGCCCCATACACCTACCCTCCTCCACCATCTCACCACCACCAATTCCAGCGTGACGCCCAGCAACTCTTCCAGCGCGACGCCCAGACCATCACCCCGGAGGCTCTCGAGAGCGTAAAGGCCGCCATAGCCAGCAGCGACGTCGACCACAAGGCCGACGCCAAGCGTAAGGCCGTTCCCCGCCGCGCCGCCGGCCAGACTTGGGAGGATCCCTCACTGGCCGAGTTCCCTTCGTTTAACATGGCGAGAGTTGTGAGGGACAAGCGATCAGGGAAGACGAAAGGGTACGGATTCGTGAGCTTTGCGGACCCTTCGGATCTGGCGGTGGCTCTGAAGGAGATGAATGGGAAGTACGTTGGGAACAGACCGATCAAGCTTTGCAAGAGCAAGTGGAAGGAGAGAACCGATTATGATGCTGTTGATAAGCAGAAGAAGCACTCCAAGAAGAAGTTGAAGTCTTCCTCCAAGCTATATATGCGAATTGTTTTAGTTTATGAAGATTTTGAATTTTTTTTCTCCATTAAGTATTTGTTTAGCATTGCCATATTCTTTGCTGGTGACCCTTTTGAACAAAGTTGCTCCCGTGCACGGATTCCGATGATTTCGGAGAACATCCCTTCATTGGATTTTCAATTAAAAAACACTCAGATGAGATCAATCTTGGCCGTCAACAATGAGGAGATAATGGCTAACATGAACTCTGCATTGCCCAAGGAACTGACCAGTCTCCAGGAGATTATGGCTTTGTCATGGGTTTGGGGAGTTTGA 912 0.5252 MANPSSSSSSQFTYSSDPSYFPTPFHLQQPPYAPPPRPPPPTVAAAPAAAPYTYPPPPSHHHQFQRDAQQLFQRDAQTITPEALESVKAAIASSDVDHKADAKRKAVPRRAAGQTWEDPSLAEFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAVDKQKKHSKKKLKSSSKLYMRIVLVYEDFEFFFSIKYLFSIAIFFAGDPFEQSCSRARIPMISENIPSLDFQLKNTQMRSILAVNNEEIMANMNSALPKELTSLQEIMALSWVWGV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120875g00017 303 MobiDBLite consensus disorder prediction 24 58 - -
Stsc120875g00017 303 Gene3D - 120 205 IPR012677 -
Stsc120875g00017 303 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 65 123 - -
Stsc120875g00017 303 MobiDBLite consensus disorder prediction 1 68 - -
Stsc120875g00017 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 179 IPR000504 GO:0003723
Stsc120875g00017 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 173 IPR000504 GO:0003723
Stsc120875g00017 303 MobiDBLite consensus disorder prediction 1 23 - -
Stsc120875g00017 303 MobiDBLite consensus disorder prediction 93 111 - -
Stsc120875g00017 303 SUPERFAMILY RNA-binding domain, RBD 124 182 IPR035979 GO:0003676
Stsc120875g00017 303 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120875g00017 Stsc-Chr120875 122361 124261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120875g00017 121 181 Eukaryotic Initiation Factors Gene Family AT2G23350 42.623 6.59e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120875g00017 K25079 - adu:107484659 241.891