Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120875g00013 ATGGAACTTAACCAAGTTGGGGTTGTGTGTGTCATATTACTCTTACCAGCACTATGTAGATCACAAGACTCTTTCACTGATTCCAGAGCAACCTATTATGGCAGCCCTGATTGCTATGGAAATCCAAAGGGAGCTTGTGGGTTTGGAGAATATGGAAGAACAGTCAATGATGGCAGTGTTGCAGGCGTGTCTAGGCTATGGAGGAATGGAACTGGCTGTGGTGCATGCTACCAGGCAAGGTGCAAAATAGAGCGATACTGCGACGAGGAAGGAACATACGTGGTGGTTACAGACTACGGCGAAGGTGACAGAACTGACTTCGTTATGAGCCCACGCGCCTACAAGAATTTGGGGCGTAATGACGATGCAGCAGCAGAGTTATTCAAATATGGTGTGGTTGACATTGAATACCGAAGGGTCCCTTGCAGATATGAAGGCTACAACATTGTGTTTAAGGTCCATGAACGTAGCAAGAATCCTGAATACTTTGCTCTTGTCATTCTCAATGTTGATGGTGCTTATGATGTCACTGCTGTTCAGTTGTGGCAGGAAGATTGCCAACAGTGGGTAGAAATGAGGAGGGTTTACGGGGCAGTGTTTGATTATGCGAACCCACCAAGTGGTGAAATCAATTTGAGGTTCCAAGTGAGTGGCAGTGCCGGAGTCTATTGGGTGCAATCAAAGAATGCTATTCCTAGTGATTGGACTGCTGGAGCTGCTTATGACTCTCAGCTTCAGCTTACTTAA 747 0.4618 MELNQVGVVCVILLLPALCRSQDSFTDSRATYYGSPDCYGNPKGACGFGEYGRTVNDGSVAGVSRLWRNGTGCGACYQARCKIERYCDEEGTYVVVTDYGEGDRTDFVMSPRAYKNLGRNDDAAAELFKYGVVDIEYRRVPCRYEGYNIVFKVHERSKNPEYFALVILNVDGAYDVTAVQLWQEDCQQWVEMRRVYGAVFDYANPPSGEINLRFQVSGSAGVYWVQSKNAIPSDWTAGAAYDSQLQLT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120875g00013 248 Gene3D - 17 142 IPR036908 -
Stsc120875g00013 248 Pfam Expansin C-terminal domain 149 232 IPR007117 -
Stsc120875g00013 248 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Stsc120875g00013 248 SUPERFAMILY PHL pollen allergen 148 243 IPR036749 -
Stsc120875g00013 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Stsc120875g00013 248 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Stsc120875g00013 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Stsc120875g00013 248 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Stsc120875g00013 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Stsc120875g00013 248 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Stsc120875g00013 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 243 IPR007117 -
Stsc120875g00013 248 CDD DPBB_EXLB_N 26 142 - -
Stsc120875g00013 248 Pfam Lytic transglycolase 60 137 IPR009009 -
Stsc120875g00013 248 Gene3D - 143 244 IPR036749 -
Stsc120875g00013 248 PANTHER EXPANSIN-B3 13 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120875g00013 Stsc-Chr120875 83731 85127 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120875g00013 9 248 Expansin Gene Family AT4G17030 61.411 1.96e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120875g00013 - - gmx:100779487 438.343