Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120875g00012 ATGGTGAATAAGCGTTCCAAAGTTGCTGCGTTTCGTGATTTCCCAGAAGGGTGTGGCACAAACCCTACAAGAACCGCTGCAAATGTTGTCTCTGGGAACAAGCACAAACGGCTTCCAGGTTTTAGGGATTTTCCTCCTTGTTGTGGACCAAATGCTTCTTCACATCTTAGTGAAGGTGAGGGTGAATCTCCAAACGGGGCTTCTTCTTTGGAGTATCAACAAGATTTTGCATTGATGGAAAGGGAATCAGCAATTGATGCAGAAGAAGAAGAAGAAGAAGAAGAGCAGGTGGGAAAGAATGTTCGTTGTGATGGTGGTGGAAAGGTGCTGGATTTAGTTCAAGTTGATTCTGAAAGGAATAATAATGGTGTGGAAAAATTGAGGAAGGTTGAATTGAATTCTAATGATTCGAAGGCTGCTTCTCGCAGGCCAGTGGTGCTAGCATTGATGTGTGAATCTGAATGTCCATGGAGGAATGCTGCAAGAAGAAAGCGAAGGAAAGTCCCTTTGCCGTTGCAAATTGACATGTCTAATGTGAAGCCTTTGCAGAAGAAACCACATGGTTCAAAGGTGAAGAATCAGGACAAAGATTCTTCTATTGTGACTCGAAAGAAAGTGAGGGAAACATTGCGCCTTTTTCAAGCGGTTTATAGAAAGCTTTTGCACGGAGAAGAATCGAAGCTAGAAAGGAAGGCGAGTAGCTCTGGGAGTGTTGATGTACAAGCAGCTGAGATCCTTATGGACAAAGGGAAATATCTTAACACCAACAGGGTCTTGGGATCTGTTCCTGGGGTCGAAGTTGGCGACGAGTTTCAGTATAAGGTAGAGCTTGCCATAGTTGGCCTTCATCAGAGGATTCAAAGTGACATAGATTATGTTGAGAATAATGGGAAGACCCTCGCCATGAGTGTTATCGTGCTGGGAGGATATGGCGATGAGTCAGAAGATTCAGATGTCTTGATATACACAAGTTTGGGTGGGAATAATACTGATAAAGAAATCGAAGATCAGAAGCTCGAGCAGCAAAATCAGTCTTTAAGGAACAGCATTGAGGAAAAGAATCCTGTTAGGGTGATAAGGACCACGGAATCAATGGATGAGAAGGGTAAGAAATATGTCTATGATGGACAGTATTTGGTTGAGTCTTGTTGGCAGGATAAGGGACCGCAGGGTACATCGGTTCTTAGGTTTCGGCTGCGAAGGATCCCGGATCAACCGAAGCCTTCTTGGAAAGAAGTAAGGAGATCTGAAAGATTGAGAACCAGAGAACGCGTAATTGTTCATGACATTTCAAATGGGAAGGAGCAAGTTCCAATTTGTGCTGTCAACACCATAGATAACCAAAGTGTTCCACCATTTGAGTATATCACTAGAATGATATATCCAAATTGGTGCAATCCTATTCCTCCAGAAGGCTGTGATTGTGTTGAGACATGTTCAGAATCAGAGAACTGTTCTTGTGCTGCGAAAAACGGTGGTGATATCCCATTCAACCATGATGGGGCCATTGTAGAATTAAAGTCTCTGGTCTACGAGTGTGGAGTTTCTTGCAAGTGCCCTCCAACATGCCACAATAGAGTTAGCCAACATGGTGTGAAGTTGCAACTCGAAATCTTCAAAACCGATTCAAGAGGTTGGGGTGTGAGATCTTTGAATTCGATCCCTTCGGGGAGTTTTATCTGTGAGTATCTGGGGGAGCTTCTTGGAGAGGATGAAGCTGAAGAAAGAGTTGACAATGATGAGTATCTTTTCGACATCGGCAATAATAACCAAAGCAGCCTTGCCCTTTGGGATGAACTGTCAGTGGTTATGCCTGATGCACATTCAAACCCTTGTTGTGAAGAAGTTGTGGAGGATGGTGGATTCACCATTGATGCTTTACACTATGGTAATGTTGGGAGGTTCATCAACCATAGTTGCTCCCCTAATCTGTATGCACAGAATGTGCTTTATGATCATGATGACAAGAGGATTCCCCATGTAATGCTGTTTGCTACTGAAGACATTCCACCATTGCAAGAGTTGACTTATGATTACAATTACAAGATAGATCAGGTTTTTGATTCTCAGGGGAACATCAAAAGGAAGAACTGCTATTGTGGTTCTGTGGAATGCACTGGTAGGATGTACTGA 2133 0.4323 MVNKRSKVAAFRDFPEGCGTNPTRTAANVVSGNKHKRLPGFRDFPPCCGPNASSHLSEGEGESPNGASSLEYQQDFALMERESAIDAEEEEEEEEQVGKNVRCDGGGKVLDLVQVDSERNNNGVEKLRKVELNSNDSKAASRRPVVLALMCESECPWRNAARRKRRKVPLPLQIDMSNVKPLQKKPHGSKVKNQDKDSSIVTRKKVRETLRLFQAVYRKLLHGEESKLERKASSSGSVDVQAAEILMDKGKYLNTNRVLGSVPGVEVGDEFQYKVELAIVGLHQRIQSDIDYVENNGKTLAMSVIVLGGYGDESEDSDVLIYTSLGGNNTDKEIEDQKLEQQNQSLRNSIEEKNPVRVIRTTESMDEKGKKYVYDGQYLVESCWQDKGPQGTSVLRFRLRRIPDQPKPSWKEVRRSERLRTRERVIVHDISNGKEQVPICAVNTIDNQSVPPFEYITRMIYPNWCNPIPPEGCDCVETCSESENCSCAAKNGGDIPFNHDGAIVELKSLVYECGVSCKCPPTCHNRVSQHGVKLQLEIFKTDSRGWGVRSLNSIPSGSFICEYLGELLGEDEAEERVDNDEYLFDIGNNNQSSLALWDELSVVMPDAHSNPCCEEVVEDGGFTIDALHYGNVGRFINHSCSPNLYAQNVLYDHDDKRIPHVMLFATEDIPPLQELTYDYNYKIDQVFDSQGNIKRKNCYCGSVECTGRMY 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120875g00012 710 SUPERFAMILY PUA domain-like 242 414 IPR015947 -
Stsc120875g00012 710 SUPERFAMILY SET domain 419 687 IPR046341 -
Stsc120875g00012 710 SMART G9a_1 255 405 IPR003105 -
Stsc120875g00012 710 ProSiteProfiles SET domain profile. 534 680 IPR001214 GO:0005515
Stsc120875g00012 710 ProSiteProfiles Post-SET domain profile. 694 710 IPR003616 -
Stsc120875g00012 710 Pfam SAD/SRA domain 259 405 IPR003105 -
Stsc120875g00012 710 Gene3D SET domain 422 710 IPR046341 -
Stsc120875g00012 710 Gene3D - 242 421 IPR036987 -
Stsc120875g00012 710 Pfam Pre-SET motif 430 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120875g00012 710 ProSiteProfiles Pre-SET domain profile. 471 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120875g00012 710 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 110 710 IPR025794 GO:0016571
Stsc120875g00012 710 ProSiteProfiles YDG domain profile. 260 401 IPR003105 -
Stsc120875g00012 710 SMART preset_2 427 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120875g00012 710 SMART set_7 534 686 IPR001214 GO:0005515
Stsc120875g00012 710 Pfam SET domain 545 680 IPR001214 GO:0005515
Stsc120875g00012 710 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 153 703 - -
Stsc120875g00012 710 SMART PostSET_3 694 710 IPR003616 -
Stsc120875g00012 710 Coils Coil 329 349 - -
Stsc120875g00012 710 MobiDBLite consensus disorder prediction 41 68 - -
Stsc120875g00012 710 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120875g00012 Stsc-Chr120875 81337 83616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120875g00012 203 709 Su(var)3-9 homologs AT5G04940 36.952 1.87e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc120875g00012 SAD_SRA 4.6e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120875g00012 K11420 - adu:107484449 1049.27