Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120875g00010 ATGATATACGAGGTTTTATCAGATGCAAGCAGTGATTATCAGTTTACCATAGCTTGTGAGAATGAGGAAATTAACAATAGGGGGGGAGCTTGTGGCTATGGCGAGTACGGAAGGACCCTCAACGGCGGGAATGTTGCGGCCGTTTCCGGTACTCTATGGAAAGATGGAAGTGGTTGCGGCGCATGCTATCAGATTAGGTGTAAAATAGGACAATATTGTGAGGAAGATGGAACACATGTTGTAGTAACAGACTATGGTGAAGGGGACAGAACAGATTTCATAATGAGCGAGCATGCATTCTCAAATCTGGCACGTGACTCAGCTTCTTCTGCAAAGTTGAAGAAATATGGTGTTGTGGACATTGAATACAAGAGAGTCTCTTGTAAATACTCTAAATCCAATGTCCTTGTTAAGCTCCATGAAAACAGCAATAACCCTTATTACTTTGCTATCTTGCTTCTCAATGTTGGTGGAAAATGTGATGTTGCTGCTGTTCACTTATGGCTGGAGGATCACAAAGAATGGAATCCATTGCGAAGGGTTTACGGAACAGTATTTGATTATGAGAACCCACCAAGTGGTAAAATCACTTTAAGGTTCCAAATGGATTGTGGTGAAAGGCTTGTTTGGGTGCATCCCAAGAAACCTATTCCTACTGATTGGAATGCTGGAGATGCTTATGACACCGGCCTTCAGTTCTAA 702 0.4245 MIYEVLSDASSDYQFTIACENEEINNRGGACGYGEYGRTLNGGNVAAVSGTLWKDGSGCGACYQIRCKIGQYCEEDGTHVVVTDYGEGDRTDFIMSEHAFSNLARDSASSAKLKKYGVVDIEYKRVSCKYSKSNVLVKLHENSNNPYYFAILLLNVGGKCDVAAVHLWLEDHKEWNPLRRVYGTVFDYENPPSGKITLRFQMDCGERLVWVHPKKPIPTDWNAGDAYDTGLQF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120875g00010 233 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Stsc120875g00010 233 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Stsc120875g00010 233 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Stsc120875g00010 233 PRINTS Expansin/Lol pI family signature 116 132 IPR007118 GO:0005576
Stsc120875g00010 233 PANTHER EXPANSIN-B3 22 233 - -
Stsc120875g00010 233 SUPERFAMILY PHL pollen allergen 134 228 IPR036749 -
Stsc120875g00010 233 Gene3D - 7 129 IPR036908 -
Stsc120875g00010 233 Pfam Lytic transglycolase 46 122 IPR009009 -
Stsc120875g00010 233 SUPERFAMILY Barwin-like endoglucanases 25 131 IPR036908 -
Stsc120875g00010 233 Gene3D - 130 233 IPR036749 -
Stsc120875g00010 233 Pfam Expansin C-terminal domain 137 209 IPR007117 -
Stsc120875g00010 233 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 147 229 IPR007117 -
Stsc120875g00010 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 133 IPR007112 -
Stsc120875g00010 233 SMART dpbb_1 45 123 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120875g00010 Stsc-Chr120875 69716 72925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120875g00010 26 231 Expansin Gene Family AT4G17030 50.000 3.57e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120875g00010 - - ccaj:109800044 270.011