Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120875g00007 ATGGAGCTTAAGCACTACCAACTTGGTCTTGTTTGTGTTATACTGCTTTTACCAGCACTAAGCAGTGCCACTAATTATAATACCGACTACTGCCCTTGGAATCCTTACAAGAACTCTAGAGCATCCTTTTATGGTACCCGGGATGGTTATGGCACTTCAAGTGGAGCATGTGGATATGGCGAATATGGAAGGACGGTGAATGATGGCAAGGTTGCAGCTGTATCCGGCTTATGGAGAGGCGGAAGCGGCTGTGGCGCATGCTACCAGGTTATATGTAAAGTACCAACTTTGTGCAAAGCAAAGGGGGTAACAGTGGTGGCAACAGATTATGGGCAGGGAGACAGAACAGACTTCATAATGAGCCCACGGGCTTTTGAGGGTTTGGGTGTGAGCCCAGGTGCTTCTAAAGAACTCAAGAAATACGGTACTCTTGATATTGCATACAAGAGAGTCCCTTGCAAGTACTTCCCCCGCAACATTTTTGTTAAGGTTCAAGAAAGTAGCAGCAACCCTGGATACTTCGCTATGGAGTTTCTCAACGTTGCTGGATCATATGATATCACTGATGTTCAATTGTGGGAGGATTCACGGAAACAATGGAGCCCATTGCGTAGATCTTATGGGGCAGTGTTTGACTATGCGAACCCACCAAGGGGTCAACTCTTTTTGAGGTTCCAAGTGATTGGTTGTGATGGAACTTATTGGAAGAAACCAAACCCTATCCCAGCTGATTGGAAGCCCAAAATGAGTTATGACACTGGACTTCAGCTTAAATAA 777 0.4556 MELKHYQLGLVCVILLLPALSSATNYNTDYCPWNPYKNSRASFYGTRDGYGTSSGACGYGEYGRTVNDGKVAAVSGLWRGGSGCGACYQVICKVPTLCKAKGVTVVATDYGQGDRTDFIMSPRAFEGLGVSPGASKELKKYGTLDIAYKRVPCKYFPRNIFVKVQESSSNPGYFAMEFLNVAGSYDITDVQLWEDSRKQWSPLRRSYGAVFDYANPPRGQLFLRFQVIGCDGTYWKKPNPIPADWKPKMSYDTGLQLK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120875g00007 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 158 IPR007112 -
Stsc120875g00007 258 SUPERFAMILY PHL pollen allergen 158 252 IPR036749 -
Stsc120875g00007 258 Gene3D - 157 257 IPR036749 -
Stsc120875g00007 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 253 IPR007117 -
Stsc120875g00007 258 Gene3D - 19 154 IPR036908 -
Stsc120875g00007 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Stsc120875g00007 258 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Stsc120875g00007 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Stsc120875g00007 258 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Stsc120875g00007 258 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Stsc120875g00007 258 CDD DPBB_EXLB_N 38 153 - -
Stsc120875g00007 258 Pfam Lytic transglycolase 75 140 IPR009009 -
Stsc120875g00007 258 PANTHER EXPANSIN-B3 17 256 - -
Stsc120875g00007 258 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Stsc120875g00007 258 SUPERFAMILY Barwin-like endoglucanases 30 156 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120875g00007 Stsc-Chr120875 52009 54610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120875g00007 1 257 Expansin Gene Family AT4G17030 46.154 6.97e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120875g00007 - - gmx:100778424 305.834