Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120875g00006 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGAAATGGGCCACCCGAGAAGCCAGTGCTATGCAATGCATGTGGTTCTCGCTGGAGGACCAAAGGAACACTTGCAAATTATACCCCTTTACATGCCCGAGCAGAAACCGATGATTCGGAAGACCCAAAGGTTTCTAGGGTGAAGAACTTAACATCAAACAAAGGCAAAGACGTGACGTTGCTCAAGCGAAAGCTGAACCATGATGATGTTGGATCTGGAGGGCCTGTCCCTGATTACAATCAAGCATTCCGGAAGGTTATGGATGAAGATAAAGGCAATAGATCAAGCTCAGGGTCAGCTGGCTCTAACTTTGAGAGCAGTGCCCATTATGGTGGCATCGATGCTAGTGATTTAACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCTATGGTTCCTTCAAAGAAGAGGACATGTTGTGGTCGTCAGAAGCCTTCTCCGGTTGAGAAGCTCACAAAAGATTTGTGTACTATACTTCATGAACAACAGTCTTATTTTTCTGTGTCTTCTGAAGACGATCTTCTATTCGATAGTGAAGCACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCCATAGCTCGTGAAGAAGAGTCCGAGGCTAGCTCGCTTTCAGTTGATAATAAACAATGCCTAATGAGCGATGCATATTCGTGTTCTGGTCCGCCTCCGGTGCACAGTGACTGCAGTGGAATGAACTCGTTCCCGGTAGTTGAAAAGGCCAGAAACTCTACTGGAAAAGTAATGTCGCACCAGCAACTTCAAAGGGGCAAGTCACAGCATGAAAGATGGCAACTCCTGGGAAATCATGATTCACCACTATGTTCACTTGATTTAAATGATGTAGTGAACTTTGAGGTGTTTACAAGAAACTTGACAAATGAAGAGCAGCAACAATTAATGAAGTATCTTCCAGTGGTAGATACTGCTGAATCTCCTGACAGCCTTAAAAGAATGTTCAACAGCCCTCAATTCAAGGAGACCTTGACTTATCTTCAGCAACTTCTTGGGGAAGGCGTCTTCGATATATCTTTGGTGGGAGCAAAACCTGAGGACTGCAAGACCTTGAAAAGGTTCGCGTTATCTGATCTGTCAAAATCAAAATGGGTAGAACACTACAGTTTTCTCAAGAAGTCTACAGACCGAGCTGAAAAATCTATTGCTCAGGGATCGGCTGGTATGGCATCGAGTAATGTCGCAAAAGTCAAGAGATTGTTGCATGACAGCCAAAACAAAAAGTTTCCAGAATTGAAGACAACAATGAGAAGCCCCAAAAGGATTATCATCAAGTCCGGTTGTGACGGAAAAGAAGAAACGGAAGAAGGCTCTTGCCTTAGTCCAAAGAACCTATTTGCTTTGCCTCGTGATTGTAGCTCGCTGATGCTGGATCCTTTAAGCTTTGCAGACGAGAATTCCGATCAGGATCTTTTGCTAGAGGTTCCGTCTAACAGCTCGTTTCCACAGGCAGAACTCCTGTACCCGACTTTAAGCTTCGGCGCTCAAGCCAGTCATAGTAGTTGCTCAGTTAAATCACAGGTTACTCTTGACTAA 1623 0.4504 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDSEDPKVSRVKNLTSNKGKDVTLLKRKLNHDDVGSGGPVPDYNQAFRKVMDEDKGNRSSSGSAGSNFESSAHYGGIDASDLTGPAQSVVWDAMVPSKKRTCCGRQKPSPVEKLTKDLCTILHEQQSYFSVSSEDDLLFDSEAPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQCLMSDAYSCSGPPPVHSDCSGMNSFPVVEKARNSTGKVMSHQQLQRGKSQHERWQLLGNHDSPLCSLDLNDVVNFEVFTRNLTNEEQQQLMKYLPVVDTAESPDSLKRMFNSPQFKETLTYLQQLLGEGVFDISLVGAKPEDCKTLKRFALSDLSKSKWVEHYSFLKKSTDRAEKSIAQGSAGMASSNVAKVKRLLHDSQNKKFPELKTTMRSPKRIIIKSGCDGKEETEEGSCLSPKNLFALPRDCSSLMLDPLSFADENSDQDLLLEVPSNSSFPQAELLYPTLSFGAQASHSSCSVKSQVTLD 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120875g00006 540 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Stsc120875g00006 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Stsc120875g00006 540 Pfam Asx homology domain 279 366 IPR028020 -
Stsc120875g00006 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Stsc120875g00006 540 Gene3D - 292 390 IPR038108 -
Stsc120875g00006 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 405 IPR044867 -
Stsc120875g00006 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Stsc120875g00006 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 525 IPR044589 -
Stsc120875g00006 540 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Stsc120875g00006 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Stsc120875g00006 540 Gene3D - 3 74 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120875g00006 Stsc-Chr120875 45760 50585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120875g00006 1 517 C2C2-Gata Transcription Factor Family AT4G17570 48.876 3.96e-142 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc120875g00006 ASXH 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120875g00006 - - gmx:100799745 765.377